Gene : Seita.1G071900 S. italica v2.2
Defline:  (1 of 6) PTHR10252//PTHR10252:SF37 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Genomic Order:  719
Name:  ? Seita.1G071900 Secondary Identifier:  ? PAC:32696380
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G071900 0.5kb upstream 0.5kb upstream 3808 true scaffold_1: 6578486-6582293 Setaria italica
Seita.1G071900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6578486-6578985 Setaria italica
Seita.1G071900 0.5kb downstream 0.5kb downstream 3808 true scaffold_1: 6578986-6582793 Setaria italica
Seita.1G071900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6582294-6582793 Setaria italica
Seita.1G071900 1.0kb upstream 1.0kb upstream 4308 true scaffold_1: 6577986-6582293 Setaria italica
Seita.1G071900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6577986-6578985 Setaria italica
Seita.1G071900 1.0kb downstream 1.0kb downstream 4308 true scaffold_1: 6578986-6583293 Setaria italica
Seita.1G071900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6582294-6583293 Setaria italica
Seita.1G071900 2.0kb upstream 2.0kb upstream 5308 true scaffold_1: 6576986-6582293 Setaria italica
Seita.1G071900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6576986-6578985 Setaria italica
Seita.1G071900 2.0kb downstream 2.0kb downstream 5308 true scaffold_1: 6578986-6584293 Setaria italica
Seita.1G071900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6582294-6584293 Setaria italica
Seita.1G071900 5.0kb upstream 5.0kb upstream 8308 true scaffold_1: 6573986-6582293 Setaria italica
Seita.1G071900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6573986-6578985 Setaria italica
Seita.1G071900 5.0kb downstream 5.0kb downstream 8308 true scaffold_1: 6578986-6587293 Setaria italica
Seita.1G071900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6582294-6587293 Setaria italica
Seita.1G071900 10.0kb upstream 10.0kb upstream 13308 true scaffold_1: 6568986-6582293 Setaria italica
Seita.1G071900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6568986-6578985 Setaria italica
Seita.1G071900 10.0kb downstream 10.0kb downstream 13308 true scaffold_1: 6578986-6592293 Setaria italica
Seita.1G071900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6582294-6592293 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185519 5267 Panicoideae View MSA
124586022 5269 Grass View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.655        
cufflinks 14.551     High High
cufflinks 7.891        
cufflinks 8.143        
cufflinks 6.466       Low
cufflinks 16.362     High High
cufflinks 11.676        
cufflinks 9.691        
cufflinks 6.741       Low
cufflinks 9.373        
cufflinks 7.107       Low
cufflinks 13.9     High High
cufflinks 11.69        
cufflinks 5.873       Low
cufflinks 9.324        
cufflinks 13.295     High  
cufflinks 12.986        
cufflinks 15.08     High High
cufflinks 7.894        
cufflinks 10.978        

0 Strain