Gene : Seita.1G069900 S. italica v2.2
Defline:  (1 of 1) PTHR10739//PTHR10739:SF32 - CYTIDYLYLTRANSFERASE Genomic Order:  699
Name:  ? Seita.1G069900 Secondary Identifier:  ? PAC:32695184
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3561 Setaria italica pathologic  
Sitalica PWY3O-450 Setaria italica pathologic  
Sitalica PWY4FS-2 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G069900 0.5kb upstream 0.5kb upstream 4145 true scaffold_1: 6452129-6456273 Setaria italica
Seita.1G069900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6455774-6456273 Setaria italica
Seita.1G069900 0.5kb downstream 0.5kb downstream 4145 true scaffold_1: 6451629-6455773 Setaria italica
Seita.1G069900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6451629-6452128 Setaria italica
Seita.1G069900 1.0kb upstream 1.0kb upstream 4645 true scaffold_1: 6452129-6456773 Setaria italica
Seita.1G069900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6455774-6456773 Setaria italica
Seita.1G069900 1.0kb downstream 1.0kb downstream 4645 true scaffold_1: 6451129-6455773 Setaria italica
Seita.1G069900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6451129-6452128 Setaria italica
Seita.1G069900 2.0kb upstream 2.0kb upstream 5645 true scaffold_1: 6452129-6457773 Setaria italica
Seita.1G069900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6455774-6457773 Setaria italica
Seita.1G069900 2.0kb downstream 2.0kb downstream 5645 true scaffold_1: 6450129-6455773 Setaria italica
Seita.1G069900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6450129-6452128 Setaria italica
Seita.1G069900 5.0kb upstream 5.0kb upstream 8645 true scaffold_1: 6452129-6460773 Setaria italica
Seita.1G069900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6455774-6460773 Setaria italica
Seita.1G069900 5.0kb downstream 5.0kb downstream 8645 true scaffold_1: 6447129-6455773 Setaria italica
Seita.1G069900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6447129-6452128 Setaria italica
Seita.1G069900 10.0kb upstream 10.0kb upstream 13645 true scaffold_1: 6452129-6465773 Setaria italica
Seita.1G069900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6455774-6465773 Setaria italica
Seita.1G069900 10.0kb downstream 10.0kb downstream 13645 true scaffold_1: 6442129-6455773 Setaria italica
Seita.1G069900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6442129-6452128 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189968 5267 Panicoideae View MSA
124569080 5269 Grass View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.843     High  
cufflinks 15.25     High Low
cufflinks 15.858     High  
cufflinks 17.654     High  
cufflinks 15.183     High Low
cufflinks 16.264     High  
cufflinks 22.823     High  
cufflinks 22.344     High  
cufflinks 13.136     High Low
cufflinks 19.684     High  
cufflinks 20.063     High  
cufflinks 32.05     High High
cufflinks 25.705     High  
cufflinks 16.873     High  
cufflinks 25.573     High  
cufflinks 33.308     High High
cufflinks 30.205     High  
cufflinks 53.852     High High
cufflinks 24.179     High  
cufflinks 24.433     High  

0 Strain