Gene : Seita.1G074000 S. italica v2.2
Defline:  (1 of 1) PTHR12419//PTHR12419:SF17 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  740
Name:  ? Seita.1G074000 Secondary Identifier:  ? PAC:32694173
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G074000 0.5kb upstream 0.5kb upstream 4219 true scaffold_1: 6740622-6744840 Setaria italica
Seita.1G074000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6740622-6741121 Setaria italica
Seita.1G074000 0.5kb downstream 0.5kb downstream 4219 true scaffold_1: 6741122-6745340 Setaria italica
Seita.1G074000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6744841-6745340 Setaria italica
Seita.1G074000 1.0kb upstream 1.0kb upstream 4719 true scaffold_1: 6740122-6744840 Setaria italica
Seita.1G074000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6740122-6741121 Setaria italica
Seita.1G074000 1.0kb downstream 1.0kb downstream 4719 true scaffold_1: 6741122-6745840 Setaria italica
Seita.1G074000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6744841-6745840 Setaria italica
Seita.1G074000 2.0kb upstream 2.0kb upstream 5719 true scaffold_1: 6739122-6744840 Setaria italica
Seita.1G074000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6739122-6741121 Setaria italica
Seita.1G074000 2.0kb downstream 2.0kb downstream 5719 true scaffold_1: 6741122-6746840 Setaria italica
Seita.1G074000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6744841-6746840 Setaria italica
Seita.1G074000 5.0kb upstream 5.0kb upstream 8719 true scaffold_1: 6736122-6744840 Setaria italica
Seita.1G074000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6736122-6741121 Setaria italica
Seita.1G074000 5.0kb downstream 5.0kb downstream 8719 true scaffold_1: 6741122-6749840 Setaria italica
Seita.1G074000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6744841-6749840 Setaria italica
Seita.1G074000 10.0kb upstream 10.0kb upstream 13719 true scaffold_1: 6731122-6744840 Setaria italica
Seita.1G074000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6731122-6741121 Setaria italica
Seita.1G074000 10.0kb downstream 10.0kb downstream 13719 true scaffold_1: 6741122-6754840 Setaria italica
Seita.1G074000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6744841-6754840 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194869 5267 Panicoideae View MSA
124586821 5269 Grass View MSA
122048999 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.249        
cufflinks 9.68        
cufflinks 6.089       Low
cufflinks 6.96        
cufflinks 5.249       Low
cufflinks 10.668        
cufflinks 6.916        
cufflinks 8.271        
cufflinks 6.223        
cufflinks 7.444        
cufflinks 6.395        
cufflinks 13.739     High High
cufflinks 10.317        
cufflinks 7.038        
cufflinks 10.58        
cufflinks 5.316       Low
cufflinks 12.556       High
cufflinks 11.67     High High
cufflinks 6.454        
cufflinks 12.269       High

0 Strain