Gene : Seita.1G072200 S. italica v2.2
Defline:  (1 of 2) PTHR11945:SF147 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL16-RELATED Genomic Order:  722
Name:  ? Seita.1G072200 Secondary Identifier:  ? PAC:32698183
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G072200 0.5kb upstream 0.5kb upstream 3365 true scaffold_1: 6601521-6604885 Setaria italica
Seita.1G072200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6601521-6602020 Setaria italica
Seita.1G072200 0.5kb downstream 0.5kb downstream 3365 true scaffold_1: 6602021-6605385 Setaria italica
Seita.1G072200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6604886-6605385 Setaria italica
Seita.1G072200 1.0kb upstream 1.0kb upstream 3865 true scaffold_1: 6601021-6604885 Setaria italica
Seita.1G072200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6601021-6602020 Setaria italica
Seita.1G072200 1.0kb downstream 1.0kb downstream 3865 true scaffold_1: 6602021-6605885 Setaria italica
Seita.1G072200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6604886-6605885 Setaria italica
Seita.1G072200 2.0kb upstream 2.0kb upstream 4865 true scaffold_1: 6600021-6604885 Setaria italica
Seita.1G072200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6600021-6602020 Setaria italica
Seita.1G072200 2.0kb downstream 2.0kb downstream 4865 true scaffold_1: 6602021-6606885 Setaria italica
Seita.1G072200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6604886-6606885 Setaria italica
Seita.1G072200 5.0kb upstream 5.0kb upstream 7865 true scaffold_1: 6597021-6604885 Setaria italica
Seita.1G072200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6597021-6602020 Setaria italica
Seita.1G072200 5.0kb downstream 5.0kb downstream 7865 true scaffold_1: 6602021-6609885 Setaria italica
Seita.1G072200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6604886-6609885 Setaria italica
Seita.1G072200 10.0kb upstream 10.0kb upstream 12865 true scaffold_1: 6592021-6604885 Setaria italica
Seita.1G072200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6592021-6602020 Setaria italica
Seita.1G072200 10.0kb downstream 10.0kb downstream 12865 true scaffold_1: 6602021-6614885 Setaria italica
Seita.1G072200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6604886-6614885 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175549 5267 Panicoideae View MSA
124589480 5269 Grass View MSA
122046677 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.186        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.319       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low Low

0 Strain