Gene : Seita.1G077300 S. italica v2.2
Defline:  (1 of 3) PTHR13312 - HIV-INDUCED PROTEIN-7-LIKE PROTEASE Genomic Order:  773
Name:  ? Seita.1G077300 Secondary Identifier:  ? PAC:32695016
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G077300 0.5kb upstream 0.5kb upstream 4062 true scaffold_1: 7009188-7013249 Setaria italica
Seita.1G077300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7012750-7013249 Setaria italica
Seita.1G077300 0.5kb downstream 0.5kb downstream 4062 true scaffold_1: 7008688-7012749 Setaria italica
Seita.1G077300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7008688-7009187 Setaria italica
Seita.1G077300 1.0kb upstream 1.0kb upstream 4562 true scaffold_1: 7009188-7013749 Setaria italica
Seita.1G077300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7012750-7013749 Setaria italica
Seita.1G077300 1.0kb downstream 1.0kb downstream 4562 true scaffold_1: 7008188-7012749 Setaria italica
Seita.1G077300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7008188-7009187 Setaria italica
Seita.1G077300 2.0kb upstream 2.0kb upstream 5562 true scaffold_1: 7009188-7014749 Setaria italica
Seita.1G077300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7012750-7014749 Setaria italica
Seita.1G077300 2.0kb downstream 2.0kb downstream 5562 true scaffold_1: 7007188-7012749 Setaria italica
Seita.1G077300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7007188-7009187 Setaria italica
Seita.1G077300 5.0kb upstream 5.0kb upstream 8562 true scaffold_1: 7009188-7017749 Setaria italica
Seita.1G077300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7012750-7017749 Setaria italica
Seita.1G077300 5.0kb downstream 5.0kb downstream 8562 true scaffold_1: 7004188-7012749 Setaria italica
Seita.1G077300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7004188-7009187 Setaria italica
Seita.1G077300 10.0kb upstream 10.0kb upstream 13562 true scaffold_1: 7009188-7022749 Setaria italica
Seita.1G077300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7012750-7022749 Setaria italica
Seita.1G077300 10.0kb downstream 10.0kb downstream 13562 true scaffold_1: 6999188-7012749 Setaria italica
Seita.1G077300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6999188-7009187 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184618 5267 Panicoideae View MSA
124569621 5269 Grass View MSA
122046032 5273 Angiosperm View MSA
121345268 5274 Embryophyte View MSA
123424822 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.863        
cufflinks 8.409        
cufflinks 7.69        
cufflinks 8.584        
cufflinks 6.314       Low
cufflinks 9.377        
cufflinks 8.169        
cufflinks 11.167        
cufflinks 7.705        
cufflinks 26.001     High High
cufflinks 23.684     High High
cufflinks 11.779        
cufflinks 29.115     High High
cufflinks 8.262        
cufflinks 14.794     High  
cufflinks 4.755       Low
cufflinks 10.242        
cufflinks 10.576        
cufflinks 9.273        
cufflinks 12.25        

0 Strain