Gene : Seita.1G075500 S. italica v2.2
Defline:  (1 of 1) PTHR12696 - TIP120 Genomic Order:  755
Name:  ? Seita.1G075500 Secondary Identifier:  ? PAC:32697974
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G075500 0.5kb upstream 0.5kb upstream 10752 true scaffold_1: 6824367-6835118 Setaria italica
Seita.1G075500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 6824367-6824866 Setaria italica
Seita.1G075500 0.5kb downstream 0.5kb downstream 10752 true scaffold_1: 6824867-6835618 Setaria italica
Seita.1G075500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 6835119-6835618 Setaria italica
Seita.1G075500 1.0kb upstream 1.0kb upstream 11252 true scaffold_1: 6823867-6835118 Setaria italica
Seita.1G075500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 6823867-6824866 Setaria italica
Seita.1G075500 1.0kb downstream 1.0kb downstream 11252 true scaffold_1: 6824867-6836118 Setaria italica
Seita.1G075500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 6835119-6836118 Setaria italica
Seita.1G075500 2.0kb upstream 2.0kb upstream 12252 true scaffold_1: 6822867-6835118 Setaria italica
Seita.1G075500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 6822867-6824866 Setaria italica
Seita.1G075500 2.0kb downstream 2.0kb downstream 12252 true scaffold_1: 6824867-6837118 Setaria italica
Seita.1G075500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 6835119-6837118 Setaria italica
Seita.1G075500 5.0kb upstream 5.0kb upstream 15252 true scaffold_1: 6819867-6835118 Setaria italica
Seita.1G075500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 6819867-6824866 Setaria italica
Seita.1G075500 5.0kb downstream 5.0kb downstream 15252 true scaffold_1: 6824867-6840118 Setaria italica
Seita.1G075500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 6835119-6840118 Setaria italica
Seita.1G075500 10.0kb upstream 10.0kb upstream 20252 true scaffold_1: 6814867-6835118 Setaria italica
Seita.1G075500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 6814867-6824866 Setaria italica
Seita.1G075500 10.0kb downstream 10.0kb downstream 20252 true scaffold_1: 6824867-6845118 Setaria italica
Seita.1G075500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 6835119-6845118 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181866 5267 Panicoideae View MSA
124570091 5269 Grass View MSA
122049783 5273 Angiosperm View MSA
121344585 5274 Embryophyte View MSA
123423876 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.771     High  
cufflinks 26.735     High High
cufflinks 15.729     High  
cufflinks 12.235     High Low
cufflinks 12.488     High Low
cufflinks 24.273     High High
cufflinks 17.574     High  
cufflinks 14.617     High  
cufflinks 17.446     High  
cufflinks 11.337       Low
cufflinks 22.641     High High
cufflinks 16.691     High  
cufflinks 17.278     High  
cufflinks 14.357     High  
cufflinks 21.555     High High
cufflinks 13.833     High  
cufflinks 15.612     High  
cufflinks 13.14     High  
cufflinks 11.411     High Low
cufflinks 18.531     High  

0 Strain