Gene : Seita.1G077800 S. italica v2.2
Defline:  (1 of 1) PTHR11214//PTHR11214:SF120 - BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE Genomic Order:  778
Name:  ? Seita.1G077800 Secondary Identifier:  ? PAC:32697884
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G077800 0.5kb upstream 0.5kb upstream 4469 true scaffold_1: 7027010-7031478 Setaria italica
Seita.1G077800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7030979-7031478 Setaria italica
Seita.1G077800 0.5kb downstream 0.5kb downstream 4469 true scaffold_1: 7026510-7030978 Setaria italica
Seita.1G077800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7026510-7027009 Setaria italica
Seita.1G077800 1.0kb upstream 1.0kb upstream 4969 true scaffold_1: 7027010-7031978 Setaria italica
Seita.1G077800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7030979-7031978 Setaria italica
Seita.1G077800 1.0kb downstream 1.0kb downstream 4969 true scaffold_1: 7026010-7030978 Setaria italica
Seita.1G077800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7026010-7027009 Setaria italica
Seita.1G077800 2.0kb upstream 2.0kb upstream 5969 true scaffold_1: 7027010-7032978 Setaria italica
Seita.1G077800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7030979-7032978 Setaria italica
Seita.1G077800 2.0kb downstream 2.0kb downstream 5969 true scaffold_1: 7025010-7030978 Setaria italica
Seita.1G077800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7025010-7027009 Setaria italica
Seita.1G077800 5.0kb upstream 5.0kb upstream 8969 true scaffold_1: 7027010-7035978 Setaria italica
Seita.1G077800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7030979-7035978 Setaria italica
Seita.1G077800 5.0kb downstream 5.0kb downstream 8969 true scaffold_1: 7022010-7030978 Setaria italica
Seita.1G077800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7022010-7027009 Setaria italica
Seita.1G077800 10.0kb upstream 10.0kb upstream 13969 true scaffold_1: 7027010-7040978 Setaria italica
Seita.1G077800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7030979-7040978 Setaria italica
Seita.1G077800 10.0kb downstream 10.0kb downstream 13969 true scaffold_1: 7017010-7030978 Setaria italica
Seita.1G077800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7017010-7027009 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180319 5267 Panicoideae View MSA
124571186 5269 Grass View MSA
122042482 5273 Angiosperm View MSA
121348547 5274 Embryophyte View MSA
123427932 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.772     High  
cufflinks 36.466     High  
cufflinks 10.374       Low
cufflinks 14.953     High Low
cufflinks 19.019     High  
cufflinks 38.279     High  
cufflinks 37.941     High  
cufflinks 28.147     High  
cufflinks 36.881     High  
cufflinks 21.319     High  
cufflinks 47.621     High High
cufflinks 27.808     High  
cufflinks 47.578     High High
cufflinks 11.468       Low
cufflinks 34.858     High  
cufflinks 28.699     High  
cufflinks 27.496     High  
cufflinks 20.72     High  
cufflinks 13.497     High Low
cufflinks 36.92     High  

0 Strain