Gene : Seita.1G082000 S. italica v2.2
Defline:  (1 of 1) PTHR23115:SF189 - TRANSLATION FACTOR GUF1 HOMOLOG, CHLOROPLASTIC Genomic Order:  820
Name:  ? Seita.1G082000 Secondary Identifier:  ? PAC:32698371
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G082000 0.5kb upstream 0.5kb upstream 9641 true scaffold_1: 7355700-7365340 Setaria italica
Seita.1G082000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7355700-7356199 Setaria italica
Seita.1G082000 0.5kb downstream 0.5kb downstream 9641 true scaffold_1: 7356200-7365840 Setaria italica
Seita.1G082000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7365341-7365840 Setaria italica
Seita.1G082000 1.0kb upstream 1.0kb upstream 10141 true scaffold_1: 7355200-7365340 Setaria italica
Seita.1G082000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7355200-7356199 Setaria italica
Seita.1G082000 1.0kb downstream 1.0kb downstream 10141 true scaffold_1: 7356200-7366340 Setaria italica
Seita.1G082000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7365341-7366340 Setaria italica
Seita.1G082000 2.0kb upstream 2.0kb upstream 11141 true scaffold_1: 7354200-7365340 Setaria italica
Seita.1G082000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7354200-7356199 Setaria italica
Seita.1G082000 2.0kb downstream 2.0kb downstream 11141 true scaffold_1: 7356200-7367340 Setaria italica
Seita.1G082000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7365341-7367340 Setaria italica
Seita.1G082000 5.0kb upstream 5.0kb upstream 14141 true scaffold_1: 7351200-7365340 Setaria italica
Seita.1G082000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7351200-7356199 Setaria italica
Seita.1G082000 5.0kb downstream 5.0kb downstream 14141 true scaffold_1: 7356200-7370340 Setaria italica
Seita.1G082000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7365341-7370340 Setaria italica
Seita.1G082000 10.0kb upstream 10.0kb upstream 19141 true scaffold_1: 7346200-7365340 Setaria italica
Seita.1G082000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7346200-7356199 Setaria italica
Seita.1G082000 10.0kb downstream 10.0kb downstream 19141 true scaffold_1: 7356200-7375340 Setaria italica
Seita.1G082000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7365341-7375340 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184942 5267 Panicoideae View MSA
124576103 5269 Grass View MSA
122047519 5273 Angiosperm View MSA
121346880 5274 Embryophyte View MSA
123428320 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.943        
cufflinks 1.073        
cufflinks 9.798       High
cufflinks 8.921       High
cufflinks 8.164       High
cufflinks 1.709        
cufflinks 5.696        
cufflinks 6.059        
cufflinks 6.957        
cufflinks 0.638        
cufflinks 1.124        
cufflinks 0.427       Low
cufflinks 0.361       Low
cufflinks 4.341        
cufflinks 0.18       Low
cufflinks 9.105       High
cufflinks 0.46       Low
cufflinks 2.178        
cufflinks 8.703       High
cufflinks 0.253       Low

0 Strain