Gene : Seita.1G081200 S. italica v2.2
Defline:  (1 of 2) PTHR11353:SF22 - T-COMPLEX PROTEIN 1 SUBUNIT ETA Genomic Order:  812
Name:  ? Seita.1G081200 Secondary Identifier:  ? PAC:32694730
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G081200 0.5kb upstream 0.5kb upstream 5643 true scaffold_1: 7299768-7305410 Setaria italica
Seita.1G081200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7304911-7305410 Setaria italica
Seita.1G081200 0.5kb downstream 0.5kb downstream 5643 true scaffold_1: 7299268-7304910 Setaria italica
Seita.1G081200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7299268-7299767 Setaria italica
Seita.1G081200 1.0kb upstream 1.0kb upstream 6143 true scaffold_1: 7299768-7305910 Setaria italica
Seita.1G081200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7304911-7305910 Setaria italica
Seita.1G081200 1.0kb downstream 1.0kb downstream 6143 true scaffold_1: 7298768-7304910 Setaria italica
Seita.1G081200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7298768-7299767 Setaria italica
Seita.1G081200 2.0kb upstream 2.0kb upstream 7143 true scaffold_1: 7299768-7306910 Setaria italica
Seita.1G081200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7304911-7306910 Setaria italica
Seita.1G081200 2.0kb downstream 2.0kb downstream 7143 true scaffold_1: 7297768-7304910 Setaria italica
Seita.1G081200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7297768-7299767 Setaria italica
Seita.1G081200 5.0kb upstream 5.0kb upstream 10143 true scaffold_1: 7299768-7309910 Setaria italica
Seita.1G081200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7304911-7309910 Setaria italica
Seita.1G081200 5.0kb downstream 5.0kb downstream 10143 true scaffold_1: 7294768-7304910 Setaria italica
Seita.1G081200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7294768-7299767 Setaria italica
Seita.1G081200 10.0kb upstream 10.0kb upstream 15143 true scaffold_1: 7299768-7314910 Setaria italica
Seita.1G081200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7304911-7314910 Setaria italica
Seita.1G081200 10.0kb downstream 10.0kb downstream 15143 true scaffold_1: 7289768-7304910 Setaria italica
Seita.1G081200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7289768-7299767 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185515 5267 Panicoideae View MSA
124569408 5269 Grass View MSA
122049781 5273 Angiosperm View MSA
121344001 5274 Embryophyte View MSA
123424590 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.312     High  
cufflinks 26.363     High High
cufflinks 14.649     High  
cufflinks 11.077     High Low
cufflinks 7.668       Low
cufflinks 29.019     High High
cufflinks 14.993     High  
cufflinks 16.393     High  
cufflinks 13.824     High  
cufflinks 14.838        
cufflinks 20.044     High  
cufflinks 22.998     High  
cufflinks 17.366     High  
cufflinks 15.183     High  
cufflinks 22.499     High  
cufflinks 11.953     High  
cufflinks 25.123     High High
cufflinks 15.684     High  
cufflinks 9.773       Low
cufflinks 26.098     High High

0 Strain