Gene : Seita.1G081100 S. italica v2.2
Defline:  (1 of 1) 5.3.1.13 - Arabinose-5-phosphate isomerase / Phosphoarabinoisomerase Genomic Order:  811
Name:  ? Seita.1G081100 Secondary Identifier:  ? PAC:32693932
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1269 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G081100 0.5kb upstream 0.5kb upstream 4119 true scaffold_1: 7292202-7296320 Setaria italica
Seita.1G081100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7295821-7296320 Setaria italica
Seita.1G081100 0.5kb downstream 0.5kb downstream 4119 true scaffold_1: 7291702-7295820 Setaria italica
Seita.1G081100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7291702-7292201 Setaria italica
Seita.1G081100 1.0kb upstream 1.0kb upstream 4619 true scaffold_1: 7292202-7296820 Setaria italica
Seita.1G081100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7295821-7296820 Setaria italica
Seita.1G081100 1.0kb downstream 1.0kb downstream 4619 true scaffold_1: 7291202-7295820 Setaria italica
Seita.1G081100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7291202-7292201 Setaria italica
Seita.1G081100 2.0kb upstream 2.0kb upstream 5619 true scaffold_1: 7292202-7297820 Setaria italica
Seita.1G081100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7295821-7297820 Setaria italica
Seita.1G081100 2.0kb downstream 2.0kb downstream 5619 true scaffold_1: 7290202-7295820 Setaria italica
Seita.1G081100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7290202-7292201 Setaria italica
Seita.1G081100 5.0kb upstream 5.0kb upstream 8619 true scaffold_1: 7292202-7300820 Setaria italica
Seita.1G081100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7295821-7300820 Setaria italica
Seita.1G081100 5.0kb downstream 5.0kb downstream 8619 true scaffold_1: 7287202-7295820 Setaria italica
Seita.1G081100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7287202-7292201 Setaria italica
Seita.1G081100 10.0kb upstream 10.0kb upstream 13619 true scaffold_1: 7292202-7305820 Setaria italica
Seita.1G081100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7295821-7305820 Setaria italica
Seita.1G081100 10.0kb downstream 10.0kb downstream 13619 true scaffold_1: 7282202-7295820 Setaria italica
Seita.1G081100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7282202-7292201 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041154 5273 Angiosperm View MSA
122178842 5267 Panicoideae View MSA
124577036 5269 Grass View MSA
121347729 5274 Embryophyte View MSA
123423941 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.466        
cufflinks 4.001        
cufflinks 0.066     Low Low
cufflinks 0.069     Low Low
cufflinks 0.803        
cufflinks 3.42        
cufflinks 3.353        
cufflinks 8.428       High
cufflinks 5.685        
cufflinks 14.325       High
cufflinks 6.529        
cufflinks 0.985        
cufflinks 2.708        
cufflinks 0.162       Low
cufflinks 2.056        
cufflinks 1.464        
cufflinks 1.819        
cufflinks 1.756        
cufflinks 0.121       Low
cufflinks 2.043        

0 Strain