Gene : Seita.1G004600 S. italica v2.2
Defline:  (1 of 2) PF11837 - Domain of unknown function (DUF3357) (DUF3357) Genomic Order:  46
Name:  ? Seita.1G004600 Secondary Identifier:  ? PAC:32694210
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-621 Setaria italica pathologic  
Sitalica PWY66-373 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G004600 0.5kb upstream 0.5kb upstream 3969 true scaffold_1: 309258-313226 Setaria italica
Seita.1G004600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 309258-309757 Setaria italica
Seita.1G004600 0.5kb downstream 0.5kb downstream 3969 true scaffold_1: 309758-313726 Setaria italica
Seita.1G004600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 313227-313726 Setaria italica
Seita.1G004600 1.0kb upstream 1.0kb upstream 4469 true scaffold_1: 308758-313226 Setaria italica
Seita.1G004600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 308758-309757 Setaria italica
Seita.1G004600 1.0kb downstream 1.0kb downstream 4469 true scaffold_1: 309758-314226 Setaria italica
Seita.1G004600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 313227-314226 Setaria italica
Seita.1G004600 2.0kb upstream 2.0kb upstream 5469 true scaffold_1: 307758-313226 Setaria italica
Seita.1G004600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 307758-309757 Setaria italica
Seita.1G004600 2.0kb downstream 2.0kb downstream 5469 true scaffold_1: 309758-315226 Setaria italica
Seita.1G004600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 313227-315226 Setaria italica
Seita.1G004600 5.0kb upstream 5.0kb upstream 8469 true scaffold_1: 304758-313226 Setaria italica
Seita.1G004600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 304758-309757 Setaria italica
Seita.1G004600 5.0kb downstream 5.0kb downstream 8469 true scaffold_1: 309758-318226 Setaria italica
Seita.1G004600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 313227-318226 Setaria italica
Seita.1G004600 10.0kb upstream 10.0kb upstream 13469 true scaffold_1: 299758-313226 Setaria italica
Seita.1G004600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 299758-309757 Setaria italica
Seita.1G004600 10.0kb downstream 10.0kb downstream 13469 true scaffold_1: 309758-323226 Setaria italica
Seita.1G004600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 313227-323226 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186044 5267 Panicoideae View MSA
124579786 5269 Grass View MSA
122044228 5273 Angiosperm View MSA
121350675 5274 Embryophyte View MSA
123428659 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.17        
cufflinks 2.909        
cufflinks 0.059     Low Low
cufflinks 0.054     Low Low
cufflinks 0.649        
cufflinks 2.229        
cufflinks 2.052        
cufflinks 3.544        
cufflinks 1.849        
cufflinks 83.357     High High
cufflinks 81.521     High High
cufflinks 2.159        
cufflinks 13.706     High  
cufflinks 0.368       Low
cufflinks 16.471     High  
cufflinks 24.994     High High
cufflinks 6.184        
cufflinks 0.81        
cufflinks 4.126        
cufflinks 8.541        

0 Strain