Gene : Seita.1G004200 S. italica v2.2
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED Genomic Order:  42
Name:  ? Seita.1G004200 Secondary Identifier:  ? PAC:32695565
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5173 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PYRUVDEHYD-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G004200 0.5kb upstream 0.5kb upstream 7049 true scaffold_1: 279754-286802 Setaria italica
Seita.1G004200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 279754-280253 Setaria italica
Seita.1G004200 0.5kb downstream 0.5kb downstream 7049 true scaffold_1: 280254-287302 Setaria italica
Seita.1G004200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 286803-287302 Setaria italica
Seita.1G004200 1.0kb upstream 1.0kb upstream 7549 true scaffold_1: 279254-286802 Setaria italica
Seita.1G004200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 279254-280253 Setaria italica
Seita.1G004200 1.0kb downstream 1.0kb downstream 7549 true scaffold_1: 280254-287802 Setaria italica
Seita.1G004200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 286803-287802 Setaria italica
Seita.1G004200 2.0kb upstream 2.0kb upstream 8549 true scaffold_1: 278254-286802 Setaria italica
Seita.1G004200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 278254-280253 Setaria italica
Seita.1G004200 2.0kb downstream 2.0kb downstream 8549 true scaffold_1: 280254-288802 Setaria italica
Seita.1G004200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 286803-288802 Setaria italica
Seita.1G004200 5.0kb upstream 5.0kb upstream 11549 true scaffold_1: 275254-286802 Setaria italica
Seita.1G004200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 275254-280253 Setaria italica
Seita.1G004200 5.0kb downstream 5.0kb downstream 11549 true scaffold_1: 280254-291802 Setaria italica
Seita.1G004200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 286803-291802 Setaria italica
Seita.1G004200 10.0kb upstream 10.0kb upstream 16549 true scaffold_1: 270254-286802 Setaria italica
Seita.1G004200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 270254-280253 Setaria italica
Seita.1G004200 10.0kb downstream 10.0kb downstream 16549 true scaffold_1: 280254-296802 Setaria italica
Seita.1G004200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 286803-296802 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195736 5267 Panicoideae View MSA
124583040 5269 Grass View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.769     High  
cufflinks 32.236     High  
cufflinks 19.688     High Low
cufflinks 17.955     High Low
cufflinks 24.192     High  
cufflinks 32.71     High  
cufflinks 24.668     High  
cufflinks 44.322     High  
cufflinks 38.145     High  
cufflinks 28.415     High  
cufflinks 37.843     High  
cufflinks 49.418     High High
cufflinks 48.265     High High
cufflinks 21.288     High  
cufflinks 54.248     High High
cufflinks 17.248     High Low
cufflinks 63.566     High High
cufflinks 14.646     High Low
cufflinks 22.721     High  
cufflinks 58.592     High High

0 Strain