Gene : Seita.1G005300 S. italica v2.2
Defline:  (1 of 2) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Genomic Order:  53
Name:  ? Seita.1G005300 Secondary Identifier:  ? PAC:32694312
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G005300 0.5kb upstream 0.5kb upstream 5236 true scaffold_1: 351574-356809 Setaria italica
Seita.1G005300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 351574-352073 Setaria italica
Seita.1G005300 0.5kb downstream 0.5kb downstream 5236 true scaffold_1: 352074-357309 Setaria italica
Seita.1G005300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 356810-357309 Setaria italica
Seita.1G005300 1.0kb upstream 1.0kb upstream 5736 true scaffold_1: 351074-356809 Setaria italica
Seita.1G005300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 351074-352073 Setaria italica
Seita.1G005300 1.0kb downstream 1.0kb downstream 5736 true scaffold_1: 352074-357809 Setaria italica
Seita.1G005300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 356810-357809 Setaria italica
Seita.1G005300 2.0kb upstream 2.0kb upstream 6736 true scaffold_1: 350074-356809 Setaria italica
Seita.1G005300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 350074-352073 Setaria italica
Seita.1G005300 2.0kb downstream 2.0kb downstream 6736 true scaffold_1: 352074-358809 Setaria italica
Seita.1G005300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 356810-358809 Setaria italica
Seita.1G005300 5.0kb upstream 5.0kb upstream 9736 true scaffold_1: 347074-356809 Setaria italica
Seita.1G005300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 347074-352073 Setaria italica
Seita.1G005300 5.0kb downstream 5.0kb downstream 9736 true scaffold_1: 352074-361809 Setaria italica
Seita.1G005300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 356810-361809 Setaria italica
Seita.1G005300 10.0kb upstream 10.0kb upstream 14736 true scaffold_1: 342074-356809 Setaria italica
Seita.1G005300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 342074-352073 Setaria italica
Seita.1G005300 10.0kb downstream 10.0kb downstream 14736 true scaffold_1: 352074-366809 Setaria italica
Seita.1G005300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 356810-366809 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186839 5267 Panicoideae View MSA
124580043 5269 Grass View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.869        
cufflinks 1.929       Low
cufflinks 2.152       Low
cufflinks 2.594        
cufflinks 3.018        
cufflinks 2.218       Low
cufflinks 2.307        
cufflinks 3.145        
cufflinks 2.827        
cufflinks 3.086        
cufflinks 2.594        
cufflinks 3.287        
cufflinks 4.264       High
cufflinks 2.12       Low
cufflinks 2.799        
cufflinks 2.784        
cufflinks 3.691       High
cufflinks 2.926        
cufflinks 2.678        
cufflinks 3.188        

0 Strain