Gene : Seita.1G003400 S. italica v2.2
Defline:  (1 of 63) PF00892 - EamA-like transporter family (EamA) Genomic Order:  34
Name:  ? Seita.1G003400 Secondary Identifier:  ? PAC:32694462
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G003400 0.5kb upstream 0.5kb upstream 3115 true scaffold_1: 222847-225961 Setaria italica
Seita.1G003400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 222847-223346 Setaria italica
Seita.1G003400 0.5kb downstream 0.5kb downstream 3115 true scaffold_1: 223347-226461 Setaria italica
Seita.1G003400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 225962-226461 Setaria italica
Seita.1G003400 1.0kb upstream 1.0kb upstream 3615 true scaffold_1: 222347-225961 Setaria italica
Seita.1G003400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 222347-223346 Setaria italica
Seita.1G003400 1.0kb downstream 1.0kb downstream 3615 true scaffold_1: 223347-226961 Setaria italica
Seita.1G003400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 225962-226961 Setaria italica
Seita.1G003400 2.0kb upstream 2.0kb upstream 4615 true scaffold_1: 221347-225961 Setaria italica
Seita.1G003400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 221347-223346 Setaria italica
Seita.1G003400 2.0kb downstream 2.0kb downstream 4615 true scaffold_1: 223347-227961 Setaria italica
Seita.1G003400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 225962-227961 Setaria italica
Seita.1G003400 5.0kb upstream 5.0kb upstream 7615 true scaffold_1: 218347-225961 Setaria italica
Seita.1G003400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 218347-223346 Setaria italica
Seita.1G003400 5.0kb downstream 5.0kb downstream 7615 true scaffold_1: 223347-230961 Setaria italica
Seita.1G003400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 225962-230961 Setaria italica
Seita.1G003400 10.0kb upstream 10.0kb upstream 12615 true scaffold_1: 213347-225961 Setaria italica
Seita.1G003400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 213347-223346 Setaria italica
Seita.1G003400 10.0kb downstream 10.0kb downstream 12615 true scaffold_1: 223347-235961 Setaria italica
Seita.1G003400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 225962-235961 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026670 5273 Angiosperm View MSA
122196245 5267 Panicoideae View MSA
124586908 5269 Grass View MSA
121296466 5274 Embryophyte View MSA
123334621 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.319        
cufflinks 0.038     Low  
cufflinks 0.122        
cufflinks 0.149        
cufflinks 0.056     Low  
cufflinks 0.296        
cufflinks 0.015     Low Low
cufflinks 0.028     Low  
cufflinks 0.008     Low Low
cufflinks 0.032     Low  
cufflinks 0.099     Low  
cufflinks 0.803       High
cufflinks 0.013     Low Low
cufflinks 0.197        
cufflinks 0.007     Low Low
cufflinks 0.015     Low Low
cufflinks 0.327        
cufflinks 0.222        
cufflinks 0.099        
cufflinks 0.829       High

0 Strain