Gene : Seita.1G004100 S. italica v2.2
Defline:  (1 of 2) PTHR13402 - RGPR-RELATED Genomic Order:  41
Name:  ? Seita.1G004100 Secondary Identifier:  ? PAC:32695501
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G004100 0.5kb upstream 0.5kb upstream 7689 true scaffold_1: 271837-279525 Setaria italica
Seita.1G004100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 271837-272336 Setaria italica
Seita.1G004100 0.5kb downstream 0.5kb downstream 7689 true scaffold_1: 272337-280025 Setaria italica
Seita.1G004100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 279526-280025 Setaria italica
Seita.1G004100 1.0kb upstream 1.0kb upstream 8189 true scaffold_1: 271337-279525 Setaria italica
Seita.1G004100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 271337-272336 Setaria italica
Seita.1G004100 1.0kb downstream 1.0kb downstream 8189 true scaffold_1: 272337-280525 Setaria italica
Seita.1G004100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 279526-280525 Setaria italica
Seita.1G004100 2.0kb upstream 2.0kb upstream 9189 true scaffold_1: 270337-279525 Setaria italica
Seita.1G004100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 270337-272336 Setaria italica
Seita.1G004100 2.0kb downstream 2.0kb downstream 9189 true scaffold_1: 272337-281525 Setaria italica
Seita.1G004100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 279526-281525 Setaria italica
Seita.1G004100 5.0kb upstream 5.0kb upstream 12189 true scaffold_1: 267337-279525 Setaria italica
Seita.1G004100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 267337-272336 Setaria italica
Seita.1G004100 5.0kb downstream 5.0kb downstream 12189 true scaffold_1: 272337-284525 Setaria italica
Seita.1G004100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 279526-284525 Setaria italica
Seita.1G004100 10.0kb upstream 10.0kb upstream 17189 true scaffold_1: 262337-279525 Setaria italica
Seita.1G004100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 262337-272336 Setaria italica
Seita.1G004100 10.0kb downstream 10.0kb downstream 17189 true scaffold_1: 272337-289525 Setaria italica
Seita.1G004100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 279526-289525 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184261 5267 Panicoideae View MSA
124577352 5269 Grass View MSA
122051498 5273 Angiosperm View MSA
121349781 5274 Embryophyte View MSA
123425826 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.617     High High
cufflinks 19.738     High  
cufflinks 19.103     High  
cufflinks 15.525     High  
cufflinks 11.975     High Low
cufflinks 18.523     High  
cufflinks 17.79     High  
cufflinks 11.176       Low
cufflinks 10.203       Low
cufflinks 15.618     High  
cufflinks 21.132     High High
cufflinks 16.108     High  
cufflinks 15.525     High  
cufflinks 14.5     High  
cufflinks 19.769     High  
cufflinks 19.925     High  
cufflinks 13.321        
cufflinks 22.631     High High
cufflinks 15.107     High  
cufflinks 15.765     High  

0 Strain