Gene : Seita.1G009400 S. italica v2.2
Defline:  (1 of 4) PTHR18966//PTHR18966:SF223 - IONOTROPIC GLUTAMATE RECEPTOR Genomic Order:  94
Name:  ? Seita.1G009400 Secondary Identifier:  ? PAC:32697875
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G009400 0.5kb upstream 0.5kb upstream 5073 true scaffold_1: 710847-715919 Setaria italica
Seita.1G009400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 710847-711346 Setaria italica
Seita.1G009400 0.5kb downstream 0.5kb downstream 5073 true scaffold_1: 711347-716419 Setaria italica
Seita.1G009400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 715920-716419 Setaria italica
Seita.1G009400 1.0kb upstream 1.0kb upstream 5573 true scaffold_1: 710347-715919 Setaria italica
Seita.1G009400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 710347-711346 Setaria italica
Seita.1G009400 1.0kb downstream 1.0kb downstream 5573 true scaffold_1: 711347-716919 Setaria italica
Seita.1G009400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 715920-716919 Setaria italica
Seita.1G009400 2.0kb upstream 2.0kb upstream 6573 true scaffold_1: 709347-715919 Setaria italica
Seita.1G009400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 709347-711346 Setaria italica
Seita.1G009400 2.0kb downstream 2.0kb downstream 6573 true scaffold_1: 711347-717919 Setaria italica
Seita.1G009400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 715920-717919 Setaria italica
Seita.1G009400 5.0kb upstream 5.0kb upstream 9573 true scaffold_1: 706347-715919 Setaria italica
Seita.1G009400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 706347-711346 Setaria italica
Seita.1G009400 5.0kb downstream 5.0kb downstream 9573 true scaffold_1: 711347-720919 Setaria italica
Seita.1G009400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 715920-720919 Setaria italica
Seita.1G009400 10.0kb upstream 10.0kb upstream 14573 true scaffold_1: 701347-715919 Setaria italica
Seita.1G009400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 701347-711346 Setaria italica
Seita.1G009400 10.0kb downstream 10.0kb downstream 14573 true scaffold_1: 711347-725919 Setaria italica
Seita.1G009400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 715920-725919 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194507 5267 Panicoideae View MSA
124589593 5269 Grass View MSA
122051662 5273 Angiosperm View MSA
121351346 5274 Embryophyte View MSA
123428796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.012     Low  
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.166       High
cufflinks 0.007     Low  
cufflinks 0.025     Low  
cufflinks 0.164       High
cufflinks 0.004     Low Low
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.228       High

0 Strain