Gene : Seita.1G012500 S. italica v2.2
Genomic Order:  125 Name:  ? Seita.1G012500
Secondary Identifier:  ? PAC:32695549
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G012500 0.5kb upstream 0.5kb upstream 9929 true scaffold_1: 999797-1009725 Setaria italica
Seita.1G012500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 999797-1000296 Setaria italica
Seita.1G012500 0.5kb downstream 0.5kb downstream 9929 true scaffold_1: 1000297-1010225 Setaria italica
Seita.1G012500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1009726-1010225 Setaria italica
Seita.1G012500 1.0kb upstream 1.0kb upstream 10429 true scaffold_1: 999297-1009725 Setaria italica
Seita.1G012500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 999297-1000296 Setaria italica
Seita.1G012500 1.0kb downstream 1.0kb downstream 10429 true scaffold_1: 1000297-1010725 Setaria italica
Seita.1G012500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1009726-1010725 Setaria italica
Seita.1G012500 2.0kb upstream 2.0kb upstream 11429 true scaffold_1: 998297-1009725 Setaria italica
Seita.1G012500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 998297-1000296 Setaria italica
Seita.1G012500 2.0kb downstream 2.0kb downstream 11429 true scaffold_1: 1000297-1011725 Setaria italica
Seita.1G012500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1009726-1011725 Setaria italica
Seita.1G012500 5.0kb upstream 5.0kb upstream 14429 true scaffold_1: 995297-1009725 Setaria italica
Seita.1G012500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 995297-1000296 Setaria italica
Seita.1G012500 5.0kb downstream 5.0kb downstream 14429 true scaffold_1: 1000297-1014725 Setaria italica
Seita.1G012500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1009726-1014725 Setaria italica
Seita.1G012500 10.0kb upstream 10.0kb upstream 19429 true scaffold_1: 990297-1009725 Setaria italica
Seita.1G012500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 990297-1000296 Setaria italica
Seita.1G012500 10.0kb downstream 10.0kb downstream 19429 true scaffold_1: 1000297-1019725 Setaria italica
Seita.1G012500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1009726-1019725 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176946 5267 Panicoideae View MSA
124585653 5269 Grass View MSA
122043737 5273 Angiosperm View MSA
121310180 5274 Embryophyte View MSA
123426398 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.469        
cufflinks 4.402        
cufflinks 3.907        
cufflinks 5.153        
cufflinks 3.818       Low
cufflinks 4.55        
cufflinks 4.761        
cufflinks 3.751       Low
cufflinks 3.654       Low
cufflinks 5.598        
cufflinks 7.206        
cufflinks 11.773       High
cufflinks 8.475        
cufflinks 5.19        
cufflinks 12.611       High
cufflinks 4.816        
cufflinks 15.772     High High
cufflinks 8.961        
cufflinks 4.896        
cufflinks 8.742        

0 Strain