Gene : Seita.1G013300 S. italica v2.2
Defline:  (1 of 1) PTHR11177:SF92 - CHITINASE DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  133
Name:  ? Seita.1G013300 Secondary Identifier:  ? PAC:32697502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G013300 0.5kb upstream 0.5kb upstream 4749 true scaffold_1: 1104706-1109454 Setaria italica
Seita.1G013300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1108955-1109454 Setaria italica
Seita.1G013300 0.5kb downstream 0.5kb downstream 4749 true scaffold_1: 1104206-1108954 Setaria italica
Seita.1G013300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1104206-1104705 Setaria italica
Seita.1G013300 1.0kb upstream 1.0kb upstream 5249 true scaffold_1: 1104706-1109954 Setaria italica
Seita.1G013300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1108955-1109954 Setaria italica
Seita.1G013300 1.0kb downstream 1.0kb downstream 5249 true scaffold_1: 1103706-1108954 Setaria italica
Seita.1G013300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1103706-1104705 Setaria italica
Seita.1G013300 2.0kb upstream 2.0kb upstream 6249 true scaffold_1: 1104706-1110954 Setaria italica
Seita.1G013300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1108955-1110954 Setaria italica
Seita.1G013300 2.0kb downstream 2.0kb downstream 6249 true scaffold_1: 1102706-1108954 Setaria italica
Seita.1G013300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1102706-1104705 Setaria italica
Seita.1G013300 5.0kb upstream 5.0kb upstream 9249 true scaffold_1: 1104706-1113954 Setaria italica
Seita.1G013300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1108955-1113954 Setaria italica
Seita.1G013300 5.0kb downstream 5.0kb downstream 9249 true scaffold_1: 1099706-1108954 Setaria italica
Seita.1G013300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1099706-1104705 Setaria italica
Seita.1G013300 10.0kb upstream 10.0kb upstream 14249 true scaffold_1: 1104706-1118954 Setaria italica
Seita.1G013300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1108955-1118954 Setaria italica
Seita.1G013300 10.0kb downstream 10.0kb downstream 14249 true scaffold_1: 1094706-1108954 Setaria italica
Seita.1G013300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1094706-1104705 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177148 5267 Panicoideae View MSA
124573424 5269 Grass View MSA
122044286 5273 Angiosperm View MSA
121344422 5274 Embryophyte View MSA
123425945 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.141     High  
cufflinks 16.816     High  
cufflinks 7.855        
cufflinks 14.461     High  
cufflinks 90.196     High  
cufflinks 16.982     High  
cufflinks 74.875     High  
cufflinks 98.586     High High
cufflinks 123.733     High High
cufflinks 7.873        
cufflinks 7.274        
cufflinks 0.015     Low Low
cufflinks 1.151        
cufflinks 5.197        
cufflinks 0.013     Low Low
cufflinks 47.839     High  
cufflinks 0.028     Low Low
cufflinks 7.553        
cufflinks 11.302     High  
cufflinks 0.016     Low Low

0 Strain