Gene : Seita.1G014200 S. italica v2.2
Defline:  (1 of 1) PTHR10217:SF465 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED Genomic Order:  142
Name:  ? Seita.1G014200 Secondary Identifier:  ? PAC:32697499
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G014200 0.5kb upstream 0.5kb upstream 9329 true scaffold_1: 1225009-1234337 Setaria italica
Seita.1G014200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1225009-1225508 Setaria italica
Seita.1G014200 0.5kb downstream 0.5kb downstream 9329 true scaffold_1: 1225509-1234837 Setaria italica
Seita.1G014200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1234338-1234837 Setaria italica
Seita.1G014200 1.0kb upstream 1.0kb upstream 9829 true scaffold_1: 1224509-1234337 Setaria italica
Seita.1G014200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1224509-1225508 Setaria italica
Seita.1G014200 1.0kb downstream 1.0kb downstream 9829 true scaffold_1: 1225509-1235337 Setaria italica
Seita.1G014200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1234338-1235337 Setaria italica
Seita.1G014200 2.0kb upstream 2.0kb upstream 10829 true scaffold_1: 1223509-1234337 Setaria italica
Seita.1G014200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1223509-1225508 Setaria italica
Seita.1G014200 2.0kb downstream 2.0kb downstream 10829 true scaffold_1: 1225509-1236337 Setaria italica
Seita.1G014200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1234338-1236337 Setaria italica
Seita.1G014200 5.0kb upstream 5.0kb upstream 13829 true scaffold_1: 1220509-1234337 Setaria italica
Seita.1G014200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1220509-1225508 Setaria italica
Seita.1G014200 5.0kb downstream 5.0kb downstream 13829 true scaffold_1: 1225509-1239337 Setaria italica
Seita.1G014200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1234338-1239337 Setaria italica
Seita.1G014200 10.0kb upstream 10.0kb upstream 18829 true scaffold_1: 1215509-1234337 Setaria italica
Seita.1G014200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1215509-1225508 Setaria italica
Seita.1G014200 10.0kb downstream 10.0kb downstream 18829 true scaffold_1: 1225509-1244337 Setaria italica
Seita.1G014200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1234338-1244337 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186050 5267 Panicoideae View MSA
124585108 5269 Grass View MSA
122044448 5273 Angiosperm View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.512        
cufflinks 6.489        
cufflinks 7.447        
cufflinks 6.591        
cufflinks 5.942        
cufflinks 5.827        
cufflinks 6.529        
cufflinks 4.955       Low
cufflinks 4.296       Low
cufflinks 5.572        
cufflinks 8.914       High
cufflinks 6.829        
cufflinks 8.157       High
cufflinks 5.402        
cufflinks 10.721       High
cufflinks 5.486        
cufflinks 7.244        
cufflinks 4.947       Low
cufflinks 5.666        
cufflinks 7.431        

0 Strain