Gene : Seita.1G012000 S. italica v2.2
Genomic Order:  120 Name:  ? Seita.1G012000
Secondary Identifier:  ? PAC:32695189
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G012000 0.5kb upstream 0.5kb upstream 6062 true scaffold_1: 929800-935861 Setaria italica
Seita.1G012000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 935362-935861 Setaria italica
Seita.1G012000 0.5kb downstream 0.5kb downstream 6062 true scaffold_1: 929300-935361 Setaria italica
Seita.1G012000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 929300-929799 Setaria italica
Seita.1G012000 1.0kb upstream 1.0kb upstream 6562 true scaffold_1: 929800-936361 Setaria italica
Seita.1G012000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 935362-936361 Setaria italica
Seita.1G012000 1.0kb downstream 1.0kb downstream 6562 true scaffold_1: 928800-935361 Setaria italica
Seita.1G012000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 928800-929799 Setaria italica
Seita.1G012000 2.0kb upstream 2.0kb upstream 7562 true scaffold_1: 929800-937361 Setaria italica
Seita.1G012000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 935362-937361 Setaria italica
Seita.1G012000 2.0kb downstream 2.0kb downstream 7562 true scaffold_1: 927800-935361 Setaria italica
Seita.1G012000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 927800-929799 Setaria italica
Seita.1G012000 5.0kb upstream 5.0kb upstream 10562 true scaffold_1: 929800-940361 Setaria italica
Seita.1G012000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 935362-940361 Setaria italica
Seita.1G012000 5.0kb downstream 5.0kb downstream 10562 true scaffold_1: 924800-935361 Setaria italica
Seita.1G012000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 924800-929799 Setaria italica
Seita.1G012000 10.0kb upstream 10.0kb upstream 15562 true scaffold_1: 929800-945361 Setaria italica
Seita.1G012000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 935362-945361 Setaria italica
Seita.1G012000 10.0kb downstream 10.0kb downstream 15562 true scaffold_1: 919800-935361 Setaria italica
Seita.1G012000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 919800-929799 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189970 5267 Panicoideae View MSA
124571384 5269 Grass View MSA
122044970 5273 Angiosperm View MSA
121310375 5274 Embryophyte View MSA
123347876 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.891       High
cufflinks 2.834        
cufflinks 1.502        
cufflinks 1.131       Low
cufflinks 1.101       Low
cufflinks 3.117        
cufflinks 2.538        
cufflinks 1.682        
cufflinks 1.872        
cufflinks 2.12        
cufflinks 3.105        
cufflinks 3.075        
cufflinks 2.577        
cufflinks 1.537        
cufflinks 1.958        
cufflinks 3.819       High
cufflinks 2.791        
cufflinks 5.464       High
cufflinks 1.444       Low
cufflinks 2.197        

0 Strain