Gene : Seita.1G014500 S. italica v2.2
Defline:  (1 of 1) 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  145
Name:  ? Seita.1G014500 Secondary Identifier:  ? PAC:32698080
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ARGSPECAT-PWY Setaria italica pathologic  
Sitalica BSUBPOLYAMSYN-PWY Setaria italica pathologic  
Sitalica POLYAMINSYN3-PWY Setaria italica pathologic  
Sitalica PWY-7528 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G014500 0.5kb upstream 0.5kb upstream 6480 true scaffold_1: 1242777-1249256 Setaria italica
Seita.1G014500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1242777-1243276 Setaria italica
Seita.1G014500 0.5kb downstream 0.5kb downstream 6480 true scaffold_1: 1243277-1249756 Setaria italica
Seita.1G014500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1249257-1249756 Setaria italica
Seita.1G014500 1.0kb upstream 1.0kb upstream 6980 true scaffold_1: 1242277-1249256 Setaria italica
Seita.1G014500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1242277-1243276 Setaria italica
Seita.1G014500 1.0kb downstream 1.0kb downstream 6980 true scaffold_1: 1243277-1250256 Setaria italica
Seita.1G014500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1249257-1250256 Setaria italica
Seita.1G014500 2.0kb upstream 2.0kb upstream 7980 true scaffold_1: 1241277-1249256 Setaria italica
Seita.1G014500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1241277-1243276 Setaria italica
Seita.1G014500 2.0kb downstream 2.0kb downstream 7980 true scaffold_1: 1243277-1251256 Setaria italica
Seita.1G014500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1249257-1251256 Setaria italica
Seita.1G014500 5.0kb upstream 5.0kb upstream 10980 true scaffold_1: 1238277-1249256 Setaria italica
Seita.1G014500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1238277-1243276 Setaria italica
Seita.1G014500 5.0kb downstream 5.0kb downstream 10980 true scaffold_1: 1243277-1254256 Setaria italica
Seita.1G014500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1249257-1254256 Setaria italica
Seita.1G014500 10.0kb upstream 10.0kb upstream 15980 true scaffold_1: 1233277-1249256 Setaria italica
Seita.1G014500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1233277-1243276 Setaria italica
Seita.1G014500 10.0kb downstream 10.0kb downstream 15980 true scaffold_1: 1243277-1259256 Setaria italica
Seita.1G014500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1249257-1259256 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185945 5267 Panicoideae View MSA
124577053 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.166        
cufflinks 12.553        
cufflinks 14.383     High  
cufflinks 13.412     High  
cufflinks 11.767     High  
cufflinks 16.394     High  
cufflinks 10.349        
cufflinks 14.198     High  
cufflinks 15.993     High  
cufflinks 9.45       Low
cufflinks 7.452       Low
cufflinks 18.164     High High
cufflinks 13.653     High  
cufflinks 16.492     High  
cufflinks 11.447        
cufflinks 10.051        
cufflinks 18.004     High High
cufflinks 7.512       Low
cufflinks 13.769     High  
cufflinks 18.069     High High

0 Strain