Gene : Seita.1G015000 S. italica v2.2
Defline:  (1 of 1) PTHR31989:SF48 - PROTEIN SOMBRERO Genomic Order:  150
Name:  ? Seita.1G015000 Secondary Identifier:  ? PAC:32694910
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G015000 0.5kb upstream 0.5kb upstream 2187 true scaffold_1: 1310561-1312747 Setaria italica
Seita.1G015000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1312248-1312747 Setaria italica
Seita.1G015000 0.5kb downstream 0.5kb downstream 2187 true scaffold_1: 1310061-1312247 Setaria italica
Seita.1G015000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1310061-1310560 Setaria italica
Seita.1G015000 1.0kb upstream 1.0kb upstream 2687 true scaffold_1: 1310561-1313247 Setaria italica
Seita.1G015000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1312248-1313247 Setaria italica
Seita.1G015000 1.0kb downstream 1.0kb downstream 2687 true scaffold_1: 1309561-1312247 Setaria italica
Seita.1G015000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1309561-1310560 Setaria italica
Seita.1G015000 2.0kb upstream 2.0kb upstream 3687 true scaffold_1: 1310561-1314247 Setaria italica
Seita.1G015000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1312248-1314247 Setaria italica
Seita.1G015000 2.0kb downstream 2.0kb downstream 3687 true scaffold_1: 1308561-1312247 Setaria italica
Seita.1G015000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1308561-1310560 Setaria italica
Seita.1G015000 5.0kb upstream 5.0kb upstream 6687 true scaffold_1: 1310561-1317247 Setaria italica
Seita.1G015000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1312248-1317247 Setaria italica
Seita.1G015000 5.0kb downstream 5.0kb downstream 6687 true scaffold_1: 1305561-1312247 Setaria italica
Seita.1G015000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1305561-1310560 Setaria italica
Seita.1G015000 10.0kb upstream 10.0kb upstream 11687 true scaffold_1: 1310561-1322247 Setaria italica
Seita.1G015000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1312248-1322247 Setaria italica
Seita.1G015000 10.0kb downstream 10.0kb downstream 11687 true scaffold_1: 1300561-1312247 Setaria italica
Seita.1G015000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1300561-1310560 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196392 5267 Panicoideae View MSA
124580563 5269 Grass View MSA
122045964 5273 Angiosperm View MSA
121351431 5274 Embryophyte View MSA
123382163 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.083     Low Low
cufflinks 0.148       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.563        
cufflinks 0.354        
cufflinks 1.445        
cufflinks 0.99        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.063        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.404        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.445        

0 Strain