Gene : Seita.1G015500 S. italica v2.2
Defline:  (1 of 1) PTHR10159//PTHR10159:SF335 - DUAL SPECIFICITY PROTEIN PHOSPHATASE Genomic Order:  155
Name:  ? Seita.1G015500 Secondary Identifier:  ? PAC:32697708
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G015500 0.5kb upstream 0.5kb upstream 3273 true scaffold_1: 1349996-1353268 Setaria italica
Seita.1G015500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1352769-1353268 Setaria italica
Seita.1G015500 0.5kb downstream 0.5kb downstream 3273 true scaffold_1: 1349496-1352768 Setaria italica
Seita.1G015500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1349496-1349995 Setaria italica
Seita.1G015500 1.0kb upstream 1.0kb upstream 3773 true scaffold_1: 1349996-1353768 Setaria italica
Seita.1G015500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1352769-1353768 Setaria italica
Seita.1G015500 1.0kb downstream 1.0kb downstream 3773 true scaffold_1: 1348996-1352768 Setaria italica
Seita.1G015500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1348996-1349995 Setaria italica
Seita.1G015500 2.0kb upstream 2.0kb upstream 4773 true scaffold_1: 1349996-1354768 Setaria italica
Seita.1G015500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1352769-1354768 Setaria italica
Seita.1G015500 2.0kb downstream 2.0kb downstream 4773 true scaffold_1: 1347996-1352768 Setaria italica
Seita.1G015500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1347996-1349995 Setaria italica
Seita.1G015500 5.0kb upstream 5.0kb upstream 7773 true scaffold_1: 1349996-1357768 Setaria italica
Seita.1G015500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1352769-1357768 Setaria italica
Seita.1G015500 5.0kb downstream 5.0kb downstream 7773 true scaffold_1: 1344996-1352768 Setaria italica
Seita.1G015500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1344996-1349995 Setaria italica
Seita.1G015500 10.0kb upstream 10.0kb upstream 12773 true scaffold_1: 1349996-1362768 Setaria italica
Seita.1G015500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1352769-1362768 Setaria italica
Seita.1G015500 10.0kb downstream 10.0kb downstream 12773 true scaffold_1: 1339996-1352768 Setaria italica
Seita.1G015500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1339996-1349995 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028012 5273 Angiosperm View MSA
122184633 5267 Panicoideae View MSA
124580391 5269 Grass View MSA
121297567 5274 Embryophyte View MSA
123335609 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53        
cufflinks 2.698       High
cufflinks 1.199        
cufflinks 1.18        
cufflinks 0.844       Low
cufflinks 2.628       High
cufflinks 1.179        
cufflinks 1.11        
cufflinks 0.841       Low
cufflinks 1.179        
cufflinks 1.121        
cufflinks 1.905        
cufflinks 1.589        
cufflinks 1.605        
cufflinks 1.764        
cufflinks 1.521        
cufflinks 1.772        
cufflinks 3.314       High
cufflinks 0.988       Low
cufflinks 1.621        

0 Strain