Gene : Seita.1G019700 S. italica v2.2
Defline:  (1 of 1) PTHR12741:SF22 - CALLOSE SYNTHASE 8-RELATED Genomic Order:  197
Name:  ? Seita.1G019700 Secondary Identifier:  ? PAC:32696216
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6773 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G019700 0.5kb upstream 0.5kb upstream 22675 true scaffold_1: 1689183-1711857 Setaria italica
Seita.1G019700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1711358-1711857 Setaria italica
Seita.1G019700 0.5kb downstream 0.5kb downstream 22675 true scaffold_1: 1688683-1711357 Setaria italica
Seita.1G019700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1688683-1689182 Setaria italica
Seita.1G019700 1.0kb upstream 1.0kb upstream 23175 true scaffold_1: 1689183-1712357 Setaria italica
Seita.1G019700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1711358-1712357 Setaria italica
Seita.1G019700 1.0kb downstream 1.0kb downstream 23175 true scaffold_1: 1688183-1711357 Setaria italica
Seita.1G019700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1688183-1689182 Setaria italica
Seita.1G019700 2.0kb upstream 2.0kb upstream 24175 true scaffold_1: 1689183-1713357 Setaria italica
Seita.1G019700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1711358-1713357 Setaria italica
Seita.1G019700 2.0kb downstream 2.0kb downstream 24175 true scaffold_1: 1687183-1711357 Setaria italica
Seita.1G019700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1687183-1689182 Setaria italica
Seita.1G019700 5.0kb upstream 5.0kb upstream 27175 true scaffold_1: 1689183-1716357 Setaria italica
Seita.1G019700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1711358-1716357 Setaria italica
Seita.1G019700 5.0kb downstream 5.0kb downstream 27175 true scaffold_1: 1684183-1711357 Setaria italica
Seita.1G019700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1684183-1689182 Setaria italica
Seita.1G019700 10.0kb upstream 10.0kb upstream 32175 true scaffold_1: 1689183-1721357 Setaria italica
Seita.1G019700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1711358-1721357 Setaria italica
Seita.1G019700 10.0kb downstream 10.0kb downstream 32175 true scaffold_1: 1679183-1711357 Setaria italica
Seita.1G019700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1679183-1689182 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191843 5267 Panicoideae View MSA
124589873 5269 Grass View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.134       High
cufflinks 1.253        
cufflinks 0.806       Low
cufflinks 0.465       Low
cufflinks 0.436       Low
cufflinks 1.661        
cufflinks 2.404        
cufflinks 1.393        
cufflinks 1.243        
cufflinks 3.185        
cufflinks 4.316        
cufflinks 10.26       High
cufflinks 5.667        
cufflinks 2.01        
cufflinks 5.816        
cufflinks 2.637        
cufflinks 5.827        
cufflinks 4.126        
cufflinks 0.667       Low
cufflinks 4.992        

0 Strain