Gene : Seita.1G020100 S. italica v2.2
Defline:  (1 of 2) PTHR10217//PTHR10217:SF520 - VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL Genomic Order:  201
Name:  ? Seita.1G020100 Secondary Identifier:  ? PAC:32698428
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G020100 0.5kb upstream 0.5kb upstream 7430 true scaffold_1: 1728464-1735893 Setaria italica
Seita.1G020100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1728464-1728963 Setaria italica
Seita.1G020100 0.5kb downstream 0.5kb downstream 7430 true scaffold_1: 1728964-1736393 Setaria italica
Seita.1G020100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1735894-1736393 Setaria italica
Seita.1G020100 1.0kb upstream 1.0kb upstream 7930 true scaffold_1: 1727964-1735893 Setaria italica
Seita.1G020100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1727964-1728963 Setaria italica
Seita.1G020100 1.0kb downstream 1.0kb downstream 7930 true scaffold_1: 1728964-1736893 Setaria italica
Seita.1G020100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1735894-1736893 Setaria italica
Seita.1G020100 2.0kb upstream 2.0kb upstream 8930 true scaffold_1: 1726964-1735893 Setaria italica
Seita.1G020100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1726964-1728963 Setaria italica
Seita.1G020100 2.0kb downstream 2.0kb downstream 8930 true scaffold_1: 1728964-1737893 Setaria italica
Seita.1G020100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1735894-1737893 Setaria italica
Seita.1G020100 5.0kb upstream 5.0kb upstream 11930 true scaffold_1: 1723964-1735893 Setaria italica
Seita.1G020100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1723964-1728963 Setaria italica
Seita.1G020100 5.0kb downstream 5.0kb downstream 11930 true scaffold_1: 1728964-1740893 Setaria italica
Seita.1G020100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1735894-1740893 Setaria italica
Seita.1G020100 10.0kb upstream 10.0kb upstream 16930 true scaffold_1: 1718964-1735893 Setaria italica
Seita.1G020100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1718964-1728963 Setaria italica
Seita.1G020100 10.0kb downstream 10.0kb downstream 16930 true scaffold_1: 1728964-1745893 Setaria italica
Seita.1G020100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1735894-1745893 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195096 5267 Panicoideae View MSA
124572952 5269 Grass View MSA
122043816 5273 Angiosperm View MSA
121310193 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.056        
cufflinks 0.483        
cufflinks 4.992        
cufflinks 4.275        
cufflinks 1.983        
cufflinks 0.305        
cufflinks 2.397        
cufflinks 2.348        
cufflinks 2.126        
cufflinks 5.209        
cufflinks 7.403       High
cufflinks 0.085     Low Low
cufflinks 1.704        
cufflinks 4.464        
cufflinks 0.133       Low
cufflinks 1.336        
cufflinks 0.113     Low Low
cufflinks 0.499        
cufflinks 8.966       High
cufflinks 0.109     Low Low

0 Strain