Gene : Seita.1G021400 S. italica v2.2
Defline:  (1 of 1) PTHR23257:SF435 - MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE-LIKE PROTEIN Genomic Order:  214
Name:  ? Seita.1G021400 Secondary Identifier:  ? PAC:32696243
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G021400 0.5kb upstream 0.5kb upstream 14612 true scaffold_1: 1846576-1861187 Setaria italica
Seita.1G021400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1860688-1861187 Setaria italica
Seita.1G021400 0.5kb downstream 0.5kb downstream 14612 true scaffold_1: 1846076-1860687 Setaria italica
Seita.1G021400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1846076-1846575 Setaria italica
Seita.1G021400 1.0kb upstream 1.0kb upstream 15112 true scaffold_1: 1846576-1861687 Setaria italica
Seita.1G021400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1860688-1861687 Setaria italica
Seita.1G021400 1.0kb downstream 1.0kb downstream 15112 true scaffold_1: 1845576-1860687 Setaria italica
Seita.1G021400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1845576-1846575 Setaria italica
Seita.1G021400 2.0kb upstream 2.0kb upstream 16112 true scaffold_1: 1846576-1862687 Setaria italica
Seita.1G021400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1860688-1862687 Setaria italica
Seita.1G021400 2.0kb downstream 2.0kb downstream 16112 true scaffold_1: 1844576-1860687 Setaria italica
Seita.1G021400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1844576-1846575 Setaria italica
Seita.1G021400 5.0kb upstream 5.0kb upstream 19112 true scaffold_1: 1846576-1865687 Setaria italica
Seita.1G021400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1860688-1865687 Setaria italica
Seita.1G021400 5.0kb downstream 5.0kb downstream 19112 true scaffold_1: 1841576-1860687 Setaria italica
Seita.1G021400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1841576-1846575 Setaria italica
Seita.1G021400 10.0kb upstream 10.0kb upstream 24112 true scaffold_1: 1846576-1870687 Setaria italica
Seita.1G021400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1860688-1870687 Setaria italica
Seita.1G021400 10.0kb downstream 10.0kb downstream 24112 true scaffold_1: 1836576-1860687 Setaria italica
Seita.1G021400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1836576-1846575 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188613 5267 Panicoideae View MSA
124572071 5269 Grass View MSA
122048343 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351351 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.484        
cufflinks 1.454        
cufflinks 1.297        
cufflinks 1.125        
cufflinks 0.952       Low
cufflinks 1.44        
cufflinks 1.299        
cufflinks 1.375        
cufflinks 1.218        
cufflinks 1.5        
cufflinks 1.431        
cufflinks 1.791        
cufflinks 1.909       High
cufflinks 1.065       Low
cufflinks 2.066       High
cufflinks 1.458        
cufflinks 2.253       High
cufflinks 1.077       Low
cufflinks 0.976       Low
cufflinks 2.197       High

0 Strain