Gene : Seita.1G022800 S. italica v2.2
Defline:  (1 of 2) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  228
Name:  ? Seita.1G022800 Secondary Identifier:  ? PAC:32697339
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G022800 0.5kb upstream 0.5kb upstream 2839 true scaffold_1: 1991756-1994594 Setaria italica
Seita.1G022800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1991756-1992255 Setaria italica
Seita.1G022800 0.5kb downstream 0.5kb downstream 2839 true scaffold_1: 1992256-1995094 Setaria italica
Seita.1G022800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1994595-1995094 Setaria italica
Seita.1G022800 1.0kb upstream 1.0kb upstream 3339 true scaffold_1: 1991256-1994594 Setaria italica
Seita.1G022800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1991256-1992255 Setaria italica
Seita.1G022800 1.0kb downstream 1.0kb downstream 3339 true scaffold_1: 1992256-1995594 Setaria italica
Seita.1G022800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1994595-1995594 Setaria italica
Seita.1G022800 2.0kb upstream 2.0kb upstream 4339 true scaffold_1: 1990256-1994594 Setaria italica
Seita.1G022800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1990256-1992255 Setaria italica
Seita.1G022800 2.0kb downstream 2.0kb downstream 4339 true scaffold_1: 1992256-1996594 Setaria italica
Seita.1G022800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1994595-1996594 Setaria italica
Seita.1G022800 5.0kb upstream 5.0kb upstream 7339 true scaffold_1: 1987256-1994594 Setaria italica
Seita.1G022800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1987256-1992255 Setaria italica
Seita.1G022800 5.0kb downstream 5.0kb downstream 7339 true scaffold_1: 1992256-1999594 Setaria italica
Seita.1G022800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1994595-1999594 Setaria italica
Seita.1G022800 10.0kb upstream 10.0kb upstream 12339 true scaffold_1: 1982256-1994594 Setaria italica
Seita.1G022800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1982256-1992255 Setaria italica
Seita.1G022800 10.0kb downstream 10.0kb downstream 12339 true scaffold_1: 1992256-2004594 Setaria italica
Seita.1G022800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1994595-2004594 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122065722 5267 Panicoideae View MSA
124590287 5269 Grass View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.497        
cufflinks 0.087     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.128     Low  
cufflinks 0.25        
cufflinks 0.545        
cufflinks 0.038     Low Low
cufflinks 2.321       High
cufflinks 0.551        
cufflinks 1.258        
cufflinks 1.271        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.347        
cufflinks 0.227        
cufflinks 1.508       High
cufflinks 0.129        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.223        

0 Strain