Gene : Seita.1G024100 S. italica v2.2
Defline:  (1 of 1) PTHR13194:SF19 - NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN Genomic Order:  241
Name:  ? Seita.1G024100 Secondary Identifier:  ? PAC:32694571
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G024100 0.5kb upstream 0.5kb upstream 6059 true scaffold_1: 2133539-2139597 Setaria italica
Seita.1G024100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2139098-2139597 Setaria italica
Seita.1G024100 0.5kb downstream 0.5kb downstream 6059 true scaffold_1: 2133039-2139097 Setaria italica
Seita.1G024100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2133039-2133538 Setaria italica
Seita.1G024100 1.0kb upstream 1.0kb upstream 6559 true scaffold_1: 2133539-2140097 Setaria italica
Seita.1G024100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2139098-2140097 Setaria italica
Seita.1G024100 1.0kb downstream 1.0kb downstream 6559 true scaffold_1: 2132539-2139097 Setaria italica
Seita.1G024100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2132539-2133538 Setaria italica
Seita.1G024100 2.0kb upstream 2.0kb upstream 7559 true scaffold_1: 2133539-2141097 Setaria italica
Seita.1G024100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2139098-2141097 Setaria italica
Seita.1G024100 2.0kb downstream 2.0kb downstream 7559 true scaffold_1: 2131539-2139097 Setaria italica
Seita.1G024100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2131539-2133538 Setaria italica
Seita.1G024100 5.0kb upstream 5.0kb upstream 10559 true scaffold_1: 2133539-2144097 Setaria italica
Seita.1G024100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2139098-2144097 Setaria italica
Seita.1G024100 5.0kb downstream 5.0kb downstream 10559 true scaffold_1: 2128539-2139097 Setaria italica
Seita.1G024100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2128539-2133538 Setaria italica
Seita.1G024100 10.0kb upstream 10.0kb upstream 15559 true scaffold_1: 2133539-2149097 Setaria italica
Seita.1G024100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2139098-2149097 Setaria italica
Seita.1G024100 10.0kb downstream 10.0kb downstream 15559 true scaffold_1: 2123539-2139097 Setaria italica
Seita.1G024100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2123539-2133538 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040923 5273 Angiosperm View MSA
122184430 5267 Panicoideae View MSA
124588124 5269 Grass View MSA
121343830 5274 Embryophyte View MSA
123425618 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.817        
cufflinks 5.202        
cufflinks 66.131     High High
cufflinks 63.712     High High
cufflinks 58.804     High High
cufflinks 3.655        
cufflinks 27.176     High  
cufflinks 29.214     High  
cufflinks 26.475     High  
cufflinks 0.838        
cufflinks 2.396        
cufflinks 0.298       Low
cufflinks 0.646       Low
cufflinks 31.811     High  
cufflinks 0.31       Low
cufflinks 42.716     High  
cufflinks 0.313       Low
cufflinks 9.127        
cufflinks 70.566     High High
cufflinks 0.269       Low

0 Strain