Gene : Seita.1G023900 S. italica v2.2
Defline:  (1 of 2) PTHR12391 - ARP2/3 COMPLEX 21 KD SUBUNIT Genomic Order:  239
Name:  ? Seita.1G023900 Secondary Identifier:  ? PAC:32697215
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G023900 0.5kb upstream 0.5kb upstream 4239 true scaffold_1: 2117449-2121687 Setaria italica
Seita.1G023900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2121188-2121687 Setaria italica
Seita.1G023900 0.5kb downstream 0.5kb downstream 4239 true scaffold_1: 2116949-2121187 Setaria italica
Seita.1G023900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2116949-2117448 Setaria italica
Seita.1G023900 1.0kb upstream 1.0kb upstream 4739 true scaffold_1: 2117449-2122187 Setaria italica
Seita.1G023900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2121188-2122187 Setaria italica
Seita.1G023900 1.0kb downstream 1.0kb downstream 4739 true scaffold_1: 2116449-2121187 Setaria italica
Seita.1G023900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2116449-2117448 Setaria italica
Seita.1G023900 2.0kb upstream 2.0kb upstream 5739 true scaffold_1: 2117449-2123187 Setaria italica
Seita.1G023900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2121188-2123187 Setaria italica
Seita.1G023900 2.0kb downstream 2.0kb downstream 5739 true scaffold_1: 2115449-2121187 Setaria italica
Seita.1G023900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2115449-2117448 Setaria italica
Seita.1G023900 5.0kb upstream 5.0kb upstream 8739 true scaffold_1: 2117449-2126187 Setaria italica
Seita.1G023900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2121188-2126187 Setaria italica
Seita.1G023900 5.0kb downstream 5.0kb downstream 8739 true scaffold_1: 2112449-2121187 Setaria italica
Seita.1G023900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2112449-2117448 Setaria italica
Seita.1G023900 10.0kb upstream 10.0kb upstream 13739 true scaffold_1: 2117449-2131187 Setaria italica
Seita.1G023900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2121188-2131187 Setaria italica
Seita.1G023900 10.0kb downstream 10.0kb downstream 13739 true scaffold_1: 2107449-2121187 Setaria italica
Seita.1G023900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2107449-2117448 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026332 5273 Angiosperm View MSA
122176261 5267 Panicoideae View MSA
124572446 5269 Grass View MSA
121345545 5274 Embryophyte View MSA
123428247 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.27        
cufflinks 6.219       High
cufflinks 4.867        
cufflinks 3.365       Low
cufflinks 3.015       Low
cufflinks 5.881        
cufflinks 4.384        
cufflinks 4.178        
cufflinks 2.703       Low
cufflinks 8.231       High
cufflinks 4.706        
cufflinks 4.567        
cufflinks 4.039        
cufflinks 5.291        
cufflinks 6.551       High
cufflinks 3.319       Low
cufflinks 5.587        
cufflinks 3.531        
cufflinks 4.109        
cufflinks 5.035        

0 Strain