Gene : Seita.1G026600 S. italica v2.2
Defline:  (1 of 1) PTHR33210:SF6 - PROTODERMAL FACTOR 1 Genomic Order:  266
Name:  ? Seita.1G026600 Secondary Identifier:  ? PAC:32694207
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G026600 0.5kb upstream 0.5kb upstream 1883 true scaffold_1: 2370641-2372523 Setaria italica
Seita.1G026600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2372024-2372523 Setaria italica
Seita.1G026600 0.5kb downstream 0.5kb downstream 1883 true scaffold_1: 2370141-2372023 Setaria italica
Seita.1G026600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2370141-2370640 Setaria italica
Seita.1G026600 1.0kb upstream 1.0kb upstream 2383 true scaffold_1: 2370641-2373023 Setaria italica
Seita.1G026600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2372024-2373023 Setaria italica
Seita.1G026600 1.0kb downstream 1.0kb downstream 2383 true scaffold_1: 2369641-2372023 Setaria italica
Seita.1G026600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2369641-2370640 Setaria italica
Seita.1G026600 2.0kb upstream 2.0kb upstream 3383 true scaffold_1: 2370641-2374023 Setaria italica
Seita.1G026600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2372024-2374023 Setaria italica
Seita.1G026600 2.0kb downstream 2.0kb downstream 3383 true scaffold_1: 2368641-2372023 Setaria italica
Seita.1G026600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2368641-2370640 Setaria italica
Seita.1G026600 5.0kb upstream 5.0kb upstream 6383 true scaffold_1: 2370641-2377023 Setaria italica
Seita.1G026600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2372024-2377023 Setaria italica
Seita.1G026600 5.0kb downstream 5.0kb downstream 6383 true scaffold_1: 2365641-2372023 Setaria italica
Seita.1G026600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2365641-2370640 Setaria italica
Seita.1G026600 10.0kb upstream 10.0kb upstream 11383 true scaffold_1: 2370641-2382023 Setaria italica
Seita.1G026600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2372024-2382023 Setaria italica
Seita.1G026600 10.0kb downstream 10.0kb downstream 11383 true scaffold_1: 2360641-2372023 Setaria italica
Seita.1G026600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2360641-2370640 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176646 5267 Panicoideae View MSA
124579477 5269 Grass View MSA
122042133 5273 Angiosperm View MSA
121349082 5274 Embryophyte View MSA
123381156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 181.991     High High
cufflinks 130.333     High High
cufflinks 0.123        
cufflinks 0.091        
cufflinks 0.958        
cufflinks 164.3     High High
cufflinks 26.606     High  
cufflinks 30.606     High  
cufflinks 5.545        
cufflinks 422.822     High High
cufflinks 886.941     High High
cufflinks 0.036     Low Low
cufflinks 1.808        
cufflinks 0.091     Low  
cufflinks 0.037     Low Low
cufflinks 2.503        
cufflinks 0.547        
cufflinks 0.713        
cufflinks 0.028     Low Low
cufflinks 0.037     Low Low

0 Strain