Gene : Seita.1G026100 S. italica v2.2
Defline:  (1 of 2) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  261
Name:  ? Seita.1G026100 Secondary Identifier:  ? PAC:32697323
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYOXYLATE-BYPASS Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G026100 0.5kb upstream 0.5kb upstream 5292 true scaffold_1: 2342494-2347785 Setaria italica
Seita.1G026100 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2342494-2342993 Setaria italica
Seita.1G026100 0.5kb downstream 0.5kb downstream 5292 true scaffold_1: 2342994-2348285 Setaria italica
Seita.1G026100 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2347786-2348285 Setaria italica
Seita.1G026100 1.0kb upstream 1.0kb upstream 5792 true scaffold_1: 2341994-2347785 Setaria italica
Seita.1G026100 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2341994-2342993 Setaria italica
Seita.1G026100 1.0kb downstream 1.0kb downstream 5792 true scaffold_1: 2342994-2348785 Setaria italica
Seita.1G026100 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2347786-2348785 Setaria italica
Seita.1G026100 2.0kb upstream 2.0kb upstream 6792 true scaffold_1: 2340994-2347785 Setaria italica
Seita.1G026100 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2340994-2342993 Setaria italica
Seita.1G026100 2.0kb downstream 2.0kb downstream 6792 true scaffold_1: 2342994-2349785 Setaria italica
Seita.1G026100 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2347786-2349785 Setaria italica
Seita.1G026100 5.0kb upstream 5.0kb upstream 9792 true scaffold_1: 2337994-2347785 Setaria italica
Seita.1G026100 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2337994-2342993 Setaria italica
Seita.1G026100 5.0kb downstream 5.0kb downstream 9792 true scaffold_1: 2342994-2352785 Setaria italica
Seita.1G026100 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2347786-2352785 Setaria italica
Seita.1G026100 10.0kb upstream 10.0kb upstream 14792 true scaffold_1: 2332994-2347785 Setaria italica
Seita.1G026100 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2332994-2342993 Setaria italica
Seita.1G026100 10.0kb downstream 10.0kb downstream 14792 true scaffold_1: 2342994-2357785 Setaria italica
Seita.1G026100 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2347786-2357785 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179324 5267 Panicoideae View MSA
124570333 5269 Grass View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.533     High  
cufflinks 20.366     High Low
cufflinks 100.845     High High
cufflinks 112.427     High High
cufflinks 72.096     High  
cufflinks 19.034     High Low
cufflinks 20.999     High Low
cufflinks 39.757     High  
cufflinks 32.113     High  
cufflinks 45.61     High  
cufflinks 42.15     High  
cufflinks 65.691     High  
cufflinks 61.327     High  
cufflinks 56.44     High  
cufflinks 34.965     High  
cufflinks 28.441     High  
cufflinks 43.746     High  
cufflinks 147.734     High High
cufflinks 79.484     High  
cufflinks 30.806     High  

0 Strain