Gene : Seita.1G032600 S. italica v2.2
Defline:  (1 of 1) PTHR22807:SF4 - NOL1/NOP2/SUN DOMAIN FAMILY MEMBER 5B-RELATED Genomic Order:  326
Name:  ? Seita.1G032600 Secondary Identifier:  ? PAC:32697774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G032600 0.5kb upstream 0.5kb upstream 5672 true scaffold_1: 3118828-3124499 Setaria italica
Seita.1G032600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3118828-3119327 Setaria italica
Seita.1G032600 0.5kb downstream 0.5kb downstream 5672 true scaffold_1: 3119328-3124999 Setaria italica
Seita.1G032600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3124500-3124999 Setaria italica
Seita.1G032600 1.0kb upstream 1.0kb upstream 6172 true scaffold_1: 3118328-3124499 Setaria italica
Seita.1G032600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3118328-3119327 Setaria italica
Seita.1G032600 1.0kb downstream 1.0kb downstream 6172 true scaffold_1: 3119328-3125499 Setaria italica
Seita.1G032600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3124500-3125499 Setaria italica
Seita.1G032600 2.0kb upstream 2.0kb upstream 7172 true scaffold_1: 3117328-3124499 Setaria italica
Seita.1G032600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3117328-3119327 Setaria italica
Seita.1G032600 2.0kb downstream 2.0kb downstream 7172 true scaffold_1: 3119328-3126499 Setaria italica
Seita.1G032600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3124500-3126499 Setaria italica
Seita.1G032600 5.0kb upstream 5.0kb upstream 10172 true scaffold_1: 3114328-3124499 Setaria italica
Seita.1G032600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3114328-3119327 Setaria italica
Seita.1G032600 5.0kb downstream 5.0kb downstream 10172 true scaffold_1: 3119328-3129499 Setaria italica
Seita.1G032600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3124500-3129499 Setaria italica
Seita.1G032600 10.0kb upstream 10.0kb upstream 15172 true scaffold_1: 3109328-3124499 Setaria italica
Seita.1G032600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3109328-3119327 Setaria italica
Seita.1G032600 10.0kb downstream 10.0kb downstream 15172 true scaffold_1: 3119328-3134499 Setaria italica
Seita.1G032600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3124500-3134499 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182925 5267 Panicoideae View MSA
124588079 5269 Grass View MSA
122043756 5273 Angiosperm View MSA
121346877 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.623        
cufflinks 2.999        
cufflinks 1.749        
cufflinks 1.157       Low
cufflinks 1.587       Low
cufflinks 2.713        
cufflinks 1.948        
cufflinks 2.399        
cufflinks 4.155       High
cufflinks 1.933        
cufflinks 2.417        
cufflinks 2.898        
cufflinks 1.994        
cufflinks 4.131       High
cufflinks 2.35        
cufflinks 2.909        
cufflinks 3.292        
cufflinks 5.105       High
cufflinks 1.164       Low
cufflinks 2.727        

0 Strain