Gene : Seita.1G039600 S. italica v2.2
Defline:  (1 of 1) PTHR11926:SF207 - UDP-GLYCOSYLTRANSFERASE SUPERFAMILY PROTEIN Genomic Order:  396
Name:  ? Seita.1G039600 Secondary Identifier:  ? PAC:32694676
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G039600 0.5kb upstream 0.5kb upstream 6500 true scaffold_1: 3879328-3885827 Setaria italica
Seita.1G039600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3885328-3885827 Setaria italica
Seita.1G039600 0.5kb downstream 0.5kb downstream 6500 true scaffold_1: 3878828-3885327 Setaria italica
Seita.1G039600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3878828-3879327 Setaria italica
Seita.1G039600 1.0kb upstream 1.0kb upstream 7000 true scaffold_1: 3879328-3886327 Setaria italica
Seita.1G039600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3885328-3886327 Setaria italica
Seita.1G039600 1.0kb downstream 1.0kb downstream 7000 true scaffold_1: 3878328-3885327 Setaria italica
Seita.1G039600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3878328-3879327 Setaria italica
Seita.1G039600 2.0kb upstream 2.0kb upstream 8000 true scaffold_1: 3879328-3887327 Setaria italica
Seita.1G039600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3885328-3887327 Setaria italica
Seita.1G039600 2.0kb downstream 2.0kb downstream 8000 true scaffold_1: 3877328-3885327 Setaria italica
Seita.1G039600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3877328-3879327 Setaria italica
Seita.1G039600 5.0kb upstream 5.0kb upstream 11000 true scaffold_1: 3879328-3890327 Setaria italica
Seita.1G039600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3885328-3890327 Setaria italica
Seita.1G039600 5.0kb downstream 5.0kb downstream 11000 true scaffold_1: 3874328-3885327 Setaria italica
Seita.1G039600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3874328-3879327 Setaria italica
Seita.1G039600 10.0kb upstream 10.0kb upstream 16000 true scaffold_1: 3879328-3895327 Setaria italica
Seita.1G039600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3885328-3895327 Setaria italica
Seita.1G039600 10.0kb downstream 10.0kb downstream 16000 true scaffold_1: 3869328-3885327 Setaria italica
Seita.1G039600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3869328-3879327 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184799 5267 Panicoideae View MSA
124574423 5269 Grass View MSA
122042400 5273 Angiosperm View MSA
121343952 5274 Embryophyte View MSA
123379946 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.221        
cufflinks 2.667       High
cufflinks 2.481        
cufflinks 2.362        
cufflinks 1.867       Low
cufflinks 2.423        
cufflinks 2.003        
cufflinks 3.022       High
cufflinks 2.402        
cufflinks 1.802       Low
cufflinks 2.13        
cufflinks 2.265        
cufflinks 2.196        
cufflinks 1.981        
cufflinks 1.9       Low
cufflinks 2.322        
cufflinks 2.629       High
cufflinks 2.505        
cufflinks 1.802       Low
cufflinks 2.305        

0 Strain