Gene : Seita.1G041900 S. italica v2.2
Defline:  (1 of 3) PTHR11926//PTHR11926:SF355 - GLUCOSYL/GLUCURONOSYL TRANSFERASES Genomic Order:  419
Name:  ? Seita.1G041900 Secondary Identifier:  ? PAC:32697421
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G041900 0.5kb upstream 0.5kb upstream 1976 true scaffold_1: 4121143-4123118 Setaria italica
Seita.1G041900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4122619-4123118 Setaria italica
Seita.1G041900 0.5kb downstream 0.5kb downstream 1976 true scaffold_1: 4120643-4122618 Setaria italica
Seita.1G041900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4120643-4121142 Setaria italica
Seita.1G041900 1.0kb upstream 1.0kb upstream 2476 true scaffold_1: 4121143-4123618 Setaria italica
Seita.1G041900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4122619-4123618 Setaria italica
Seita.1G041900 1.0kb downstream 1.0kb downstream 2476 true scaffold_1: 4120143-4122618 Setaria italica
Seita.1G041900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4120143-4121142 Setaria italica
Seita.1G041900 2.0kb upstream 2.0kb upstream 3476 true scaffold_1: 4121143-4124618 Setaria italica
Seita.1G041900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4122619-4124618 Setaria italica
Seita.1G041900 2.0kb downstream 2.0kb downstream 3476 true scaffold_1: 4119143-4122618 Setaria italica
Seita.1G041900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4119143-4121142 Setaria italica
Seita.1G041900 5.0kb upstream 5.0kb upstream 6476 true scaffold_1: 4121143-4127618 Setaria italica
Seita.1G041900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4122619-4127618 Setaria italica
Seita.1G041900 5.0kb downstream 5.0kb downstream 6476 true scaffold_1: 4116143-4122618 Setaria italica
Seita.1G041900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4116143-4121142 Setaria italica
Seita.1G041900 10.0kb upstream 10.0kb upstream 11476 true scaffold_1: 4121143-4132618 Setaria italica
Seita.1G041900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4122619-4132618 Setaria italica
Seita.1G041900 10.0kb downstream 10.0kb downstream 11476 true scaffold_1: 4111143-4122618 Setaria italica
Seita.1G041900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4111143-4121142 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063101 5267 Panicoideae View MSA
124590467 5269 Grass View MSA
122051696 5273 Angiosperm View MSA
121351097 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.479        
cufflinks 0.714        
cufflinks 12.732     High  
cufflinks 15.888     High High
cufflinks 13.118     High  
cufflinks 0.753        
cufflinks 7.103        
cufflinks 9.149        
cufflinks 7.711        
cufflinks 2.644        
cufflinks 1.008        
cufflinks 0.077     Low Low
cufflinks 0.16     Low  
cufflinks 17.877     High High
cufflinks 0.007     Low Low
cufflinks 6.131        
cufflinks 0.025     Low Low
cufflinks 1.246        
cufflinks 10.285        
cufflinks 0.011     Low Low

0 Strain