Gene : Seita.1G042000 S. italica v2.2
Defline:  (1 of 3) PTHR11926//PTHR11926:SF355 - GLUCOSYL/GLUCURONOSYL TRANSFERASES Genomic Order:  420
Name:  ? Seita.1G042000 Secondary Identifier:  ? PAC:32693998
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G042000 0.5kb upstream 0.5kb upstream 2012 true scaffold_1: 4132071-4134082 Setaria italica
Seita.1G042000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4133583-4134082 Setaria italica
Seita.1G042000 0.5kb downstream 0.5kb downstream 2012 true scaffold_1: 4131571-4133582 Setaria italica
Seita.1G042000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4131571-4132070 Setaria italica
Seita.1G042000 1.0kb upstream 1.0kb upstream 2512 true scaffold_1: 4132071-4134582 Setaria italica
Seita.1G042000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4133583-4134582 Setaria italica
Seita.1G042000 1.0kb downstream 1.0kb downstream 2512 true scaffold_1: 4131071-4133582 Setaria italica
Seita.1G042000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4131071-4132070 Setaria italica
Seita.1G042000 2.0kb upstream 2.0kb upstream 3512 true scaffold_1: 4132071-4135582 Setaria italica
Seita.1G042000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4133583-4135582 Setaria italica
Seita.1G042000 2.0kb downstream 2.0kb downstream 3512 true scaffold_1: 4130071-4133582 Setaria italica
Seita.1G042000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4130071-4132070 Setaria italica
Seita.1G042000 5.0kb upstream 5.0kb upstream 6512 true scaffold_1: 4132071-4138582 Setaria italica
Seita.1G042000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4133583-4138582 Setaria italica
Seita.1G042000 5.0kb downstream 5.0kb downstream 6512 true scaffold_1: 4127071-4133582 Setaria italica
Seita.1G042000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4127071-4132070 Setaria italica
Seita.1G042000 10.0kb upstream 10.0kb upstream 11512 true scaffold_1: 4132071-4143582 Setaria italica
Seita.1G042000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4133583-4143582 Setaria italica
Seita.1G042000 10.0kb downstream 10.0kb downstream 11512 true scaffold_1: 4122071-4133582 Setaria italica
Seita.1G042000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4122071-4132070 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122115969 5267 Panicoideae View MSA
124590467 5269 Grass View MSA
122051696 5273 Angiosperm View MSA
121351097 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.155        
cufflinks 0.548        
cufflinks 1.037        
cufflinks 1.898        
cufflinks 1.887        
cufflinks 0.441        
cufflinks 2.069        
cufflinks 1.176        
cufflinks 0.544        
cufflinks 0.127     Low  
cufflinks 0.115     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low Low
cufflinks 2.005        
cufflinks 0.011     Low Low
cufflinks 3.146       High
cufflinks 0.022     Low Low
cufflinks 0.104        
cufflinks 3.808       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain