Gene : Seita.1G040600 S. italica v2.2
Defline:  (1 of 2) PTHR11477//PTHR11477:SF8 - TRANSCRIPTION ELONGATION FACTOR S-II Genomic Order:  406
Name:  ? Seita.1G040600 Secondary Identifier:  ? PAC:32698147
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G040600 0.5kb upstream 0.5kb upstream 6080 true scaffold_1: 3954641-3960720 Setaria italica
Seita.1G040600 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3960221-3960720 Setaria italica
Seita.1G040600 0.5kb downstream 0.5kb downstream 6080 true scaffold_1: 3954141-3960220 Setaria italica
Seita.1G040600 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3954141-3954640 Setaria italica
Seita.1G040600 1.0kb upstream 1.0kb upstream 6580 true scaffold_1: 3954641-3961220 Setaria italica
Seita.1G040600 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3960221-3961220 Setaria italica
Seita.1G040600 1.0kb downstream 1.0kb downstream 6580 true scaffold_1: 3953641-3960220 Setaria italica
Seita.1G040600 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3953641-3954640 Setaria italica
Seita.1G040600 2.0kb upstream 2.0kb upstream 7580 true scaffold_1: 3954641-3962220 Setaria italica
Seita.1G040600 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3960221-3962220 Setaria italica
Seita.1G040600 2.0kb downstream 2.0kb downstream 7580 true scaffold_1: 3952641-3960220 Setaria italica
Seita.1G040600 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3952641-3954640 Setaria italica
Seita.1G040600 5.0kb upstream 5.0kb upstream 10580 true scaffold_1: 3954641-3965220 Setaria italica
Seita.1G040600 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3960221-3965220 Setaria italica
Seita.1G040600 5.0kb downstream 5.0kb downstream 10580 true scaffold_1: 3949641-3960220 Setaria italica
Seita.1G040600 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3949641-3954640 Setaria italica
Seita.1G040600 10.0kb upstream 10.0kb upstream 15580 true scaffold_1: 3954641-3970220 Setaria italica
Seita.1G040600 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3960221-3970220 Setaria italica
Seita.1G040600 10.0kb downstream 10.0kb downstream 15580 true scaffold_1: 3944641-3960220 Setaria italica
Seita.1G040600 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3944641-3954640 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183421 5267 Panicoideae View MSA
124571254 5269 Grass View MSA
122051575 5273 Angiosperm View MSA
121345447 5274 Embryophyte View MSA
123423935 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.792     High  
cufflinks 15.147     High  
cufflinks 20.805     High High
cufflinks 16.256     High  
cufflinks 16.724     High  
cufflinks 15.222     High  
cufflinks 16.747     High  
cufflinks 11.614       Low
cufflinks 15.197     High  
cufflinks 8.693       Low
cufflinks 15.37     High  
cufflinks 15.515     High  
cufflinks 13.674     High  
cufflinks 17.108     High  
cufflinks 16.997     High  
cufflinks 21.945     High High
cufflinks 14.278     High  
cufflinks 31.1     High High
cufflinks 16.602     High  
cufflinks 11.906       Low

0 Strain