Gene : Seita.1G119800 S. italica v2.2
Defline:  (1 of 1) PTHR22760:SF4 - GPI MANNOSYLTRANSFERASE 3 Genomic Order:  1198
Name:  ? Seita.1G119800 Secondary Identifier:  ? PAC:32695772
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G119800 0.5kb upstream 0.5kb upstream 4409 true scaffold_1: 10362541-10366949 Setaria italica
Seita.1G119800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10366450-10366949 Setaria italica
Seita.1G119800 0.5kb downstream 0.5kb downstream 4409 true scaffold_1: 10362041-10366449 Setaria italica
Seita.1G119800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10362041-10362540 Setaria italica
Seita.1G119800 1.0kb upstream 1.0kb upstream 4909 true scaffold_1: 10362541-10367449 Setaria italica
Seita.1G119800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10366450-10367449 Setaria italica
Seita.1G119800 1.0kb downstream 1.0kb downstream 4909 true scaffold_1: 10361541-10366449 Setaria italica
Seita.1G119800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10361541-10362540 Setaria italica
Seita.1G119800 2.0kb upstream 2.0kb upstream 5909 true scaffold_1: 10362541-10368449 Setaria italica
Seita.1G119800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10366450-10368449 Setaria italica
Seita.1G119800 2.0kb downstream 2.0kb downstream 5909 true scaffold_1: 10360541-10366449 Setaria italica
Seita.1G119800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10360541-10362540 Setaria italica
Seita.1G119800 5.0kb upstream 5.0kb upstream 8909 true scaffold_1: 10362541-10371449 Setaria italica
Seita.1G119800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10366450-10371449 Setaria italica
Seita.1G119800 5.0kb downstream 5.0kb downstream 8909 true scaffold_1: 10357541-10366449 Setaria italica
Seita.1G119800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10357541-10362540 Setaria italica
Seita.1G119800 10.0kb upstream 10.0kb upstream 13909 true scaffold_1: 10362541-10376449 Setaria italica
Seita.1G119800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10366450-10376449 Setaria italica
Seita.1G119800 10.0kb downstream 10.0kb downstream 13909 true scaffold_1: 10352541-10366449 Setaria italica
Seita.1G119800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10352541-10362540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189205 5267 Panicoideae View MSA
124568252 5269 Grass View MSA
122042871 5273 Angiosperm View MSA
121346274 5274 Embryophyte View MSA
123425289 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.742       High
cufflinks 6.211       High
cufflinks 3.161        
cufflinks 2.39       Low
cufflinks 2.84       Low
cufflinks 5.218        
cufflinks 4.226        
cufflinks 4.082        
cufflinks 3.615        
cufflinks 4.377        
cufflinks 5.195        
cufflinks 4.641        
cufflinks 4.329        
cufflinks 2.89       Low
cufflinks 5.648       High
cufflinks 3.918        
cufflinks 4.659        
cufflinks 3.012       Low
cufflinks 2.554       Low
cufflinks 5.948       High

0 Strain