Gene : Seita.1G122300 S. italica v2.2
Defline:  (1 of 4) 1.1.1.35//4.2.1.17//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Genomic Order:  1223
Name:  ? Seita.1G122300 Secondary Identifier:  ? PAC:32696125
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica ILEUDEG-PWY Setaria italica pathologic  
Sitalica PWY-5136 Setaria italica pathologic  
Sitalica PWY-5137 Setaria italica pathologic  
Sitalica PWY-5138 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-6435 Setaria italica pathologic  
Sitalica PWY-6837 Setaria italica pathologic  
Sitalica PWY-7036 Setaria italica pathologic  
Sitalica PWY-735 Setaria italica pathologic  
Sitalica PWY-7606 Setaria italica pathologic  
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G122300 0.5kb upstream 0.5kb upstream 8979 true scaffold_1: 10619878-10628856 Setaria italica
Seita.1G122300 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10619878-10620377 Setaria italica
Seita.1G122300 0.5kb downstream 0.5kb downstream 8979 true scaffold_1: 10620378-10629356 Setaria italica
Seita.1G122300 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10628857-10629356 Setaria italica
Seita.1G122300 1.0kb upstream 1.0kb upstream 9479 true scaffold_1: 10619378-10628856 Setaria italica
Seita.1G122300 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10619378-10620377 Setaria italica
Seita.1G122300 1.0kb downstream 1.0kb downstream 9479 true scaffold_1: 10620378-10629856 Setaria italica
Seita.1G122300 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10628857-10629856 Setaria italica
Seita.1G122300 2.0kb upstream 2.0kb upstream 10479 true scaffold_1: 10618378-10628856 Setaria italica
Seita.1G122300 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10618378-10620377 Setaria italica
Seita.1G122300 2.0kb downstream 2.0kb downstream 10479 true scaffold_1: 10620378-10630856 Setaria italica
Seita.1G122300 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10628857-10630856 Setaria italica
Seita.1G122300 5.0kb upstream 5.0kb upstream 13479 true scaffold_1: 10615378-10628856 Setaria italica
Seita.1G122300 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10615378-10620377 Setaria italica
Seita.1G122300 5.0kb downstream 5.0kb downstream 13479 true scaffold_1: 10620378-10633856 Setaria italica
Seita.1G122300 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10628857-10633856 Setaria italica
Seita.1G122300 10.0kb upstream 10.0kb upstream 18479 true scaffold_1: 10610378-10628856 Setaria italica
Seita.1G122300 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10610378-10620377 Setaria italica
Seita.1G122300 10.0kb downstream 10.0kb downstream 18479 true scaffold_1: 10620378-10638856 Setaria italica
Seita.1G122300 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10628857-10638856 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178064 5267 Panicoideae View MSA
124568788 5269 Grass View MSA
122047578 5273 Angiosperm View MSA
121310763 5274 Embryophyte View MSA
123348170 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.321     High  
cufflinks 21.581     High Low
cufflinks 78.727     High High
cufflinks 64.594     High High
cufflinks 34.071     High  
cufflinks 20.128     High Low
cufflinks 25.607     High Low
cufflinks 25.758     High Low
cufflinks 22.378     High Low
cufflinks 45.951     High  
cufflinks 51.904     High  
cufflinks 42.273     High  
cufflinks 44.848     High  
cufflinks 60.012     High High
cufflinks 43.887     High  
cufflinks 29.209     High  
cufflinks 44.791     High  
cufflinks 47.588     High  
cufflinks 65.224     High High
cufflinks 38.799     High  

0 Strain