Gene : Seita.1G126000 S. italica v2.2
Defline:  (1 of 3) PTHR35772:SF1 - PHOTOSYSTEM II REACTION CENTER PROTEIN I Genomic Order:  1260
Name:  ? Seita.1G126000 Secondary Identifier:  ? PAC:32696321
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G126000 0.5kb upstream 0.5kb upstream 614 true scaffold_1: 11169521-11170134 Setaria italica
Seita.1G126000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11169635-11170134 Setaria italica
Seita.1G126000 0.5kb downstream 0.5kb downstream 614 true scaffold_1: 11169021-11169634 Setaria italica
Seita.1G126000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11169021-11169520 Setaria italica
Seita.1G126000 1.0kb upstream 1.0kb upstream 1114 true scaffold_1: 11169521-11170634 Setaria italica
Seita.1G126000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11169635-11170634 Setaria italica
Seita.1G126000 1.0kb downstream 1.0kb downstream 1114 true scaffold_1: 11168521-11169634 Setaria italica
Seita.1G126000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11168521-11169520 Setaria italica
Seita.1G126000 2.0kb upstream 2.0kb upstream 2114 true scaffold_1: 11169521-11171634 Setaria italica
Seita.1G126000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11169635-11171634 Setaria italica
Seita.1G126000 2.0kb downstream 2.0kb downstream 2114 true scaffold_1: 11167521-11169634 Setaria italica
Seita.1G126000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11167521-11169520 Setaria italica
Seita.1G126000 5.0kb upstream 5.0kb upstream 5114 true scaffold_1: 11169521-11174634 Setaria italica
Seita.1G126000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11169635-11174634 Setaria italica
Seita.1G126000 5.0kb downstream 5.0kb downstream 5114 true scaffold_1: 11164521-11169634 Setaria italica
Seita.1G126000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11164521-11169520 Setaria italica
Seita.1G126000 10.0kb upstream 10.0kb upstream 10114 true scaffold_1: 11169521-11179634 Setaria italica
Seita.1G126000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11169635-11179634 Setaria italica
Seita.1G126000 10.0kb downstream 10.0kb downstream 10114 true scaffold_1: 11159521-11169634 Setaria italica
Seita.1G126000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11159521-11169520 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027846 5273 Angiosperm View MSA
122052453 5267 Panicoideae Singleton cluster - no MSA
124352379 5269 Grass Singleton cluster - no MSA
121345076 5274 Embryophyte View MSA
123380148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.335        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.168        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain