Gene : Seita.1G129700 S. italica v2.2
Defline:  (1 of 1) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1297
Name:  ? Seita.1G129700 Secondary Identifier:  ? PAC:32698389
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-1081 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G129700 0.5kb upstream 0.5kb upstream 2989 true scaffold_1: 11786295-11789283 Setaria italica
Seita.1G129700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 11788784-11789283 Setaria italica
Seita.1G129700 0.5kb downstream 0.5kb downstream 2989 true scaffold_1: 11785795-11788783 Setaria italica
Seita.1G129700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 11785795-11786294 Setaria italica
Seita.1G129700 1.0kb upstream 1.0kb upstream 3489 true scaffold_1: 11786295-11789783 Setaria italica
Seita.1G129700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 11788784-11789783 Setaria italica
Seita.1G129700 1.0kb downstream 1.0kb downstream 3489 true scaffold_1: 11785295-11788783 Setaria italica
Seita.1G129700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 11785295-11786294 Setaria italica
Seita.1G129700 2.0kb upstream 2.0kb upstream 4489 true scaffold_1: 11786295-11790783 Setaria italica
Seita.1G129700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 11788784-11790783 Setaria italica
Seita.1G129700 2.0kb downstream 2.0kb downstream 4489 true scaffold_1: 11784295-11788783 Setaria italica
Seita.1G129700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 11784295-11786294 Setaria italica
Seita.1G129700 5.0kb upstream 5.0kb upstream 7489 true scaffold_1: 11786295-11793783 Setaria italica
Seita.1G129700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 11788784-11793783 Setaria italica
Seita.1G129700 5.0kb downstream 5.0kb downstream 7489 true scaffold_1: 11781295-11788783 Setaria italica
Seita.1G129700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 11781295-11786294 Setaria italica
Seita.1G129700 10.0kb upstream 10.0kb upstream 12489 true scaffold_1: 11786295-11798783 Setaria italica
Seita.1G129700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 11788784-11798783 Setaria italica
Seita.1G129700 10.0kb downstream 10.0kb downstream 12489 true scaffold_1: 11776295-11788783 Setaria italica
Seita.1G129700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 11776295-11786294 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197125 5267 Panicoideae View MSA
124584679 5269 Grass View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.064     Low  
cufflinks 0.154       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.094     Low High
cufflinks 0.034     Low  
cufflinks 0.037     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low Low

0 Strain