Gene : Seita.1G136200 S. italica v2.2
Defline:  (1 of 2) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  1362
Name:  ? Seita.1G136200 Secondary Identifier:  ? PAC:32694816
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G136200 0.5kb upstream 0.5kb upstream 10100 true scaffold_1: 13625885-13635984 Setaria italica
Seita.1G136200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 13635485-13635984 Setaria italica
Seita.1G136200 0.5kb downstream 0.5kb downstream 10100 true scaffold_1: 13625385-13635484 Setaria italica
Seita.1G136200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 13625385-13625884 Setaria italica
Seita.1G136200 1.0kb upstream 1.0kb upstream 10600 true scaffold_1: 13625885-13636484 Setaria italica
Seita.1G136200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 13635485-13636484 Setaria italica
Seita.1G136200 1.0kb downstream 1.0kb downstream 10600 true scaffold_1: 13624885-13635484 Setaria italica
Seita.1G136200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 13624885-13625884 Setaria italica
Seita.1G136200 2.0kb upstream 2.0kb upstream 11600 true scaffold_1: 13625885-13637484 Setaria italica
Seita.1G136200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 13635485-13637484 Setaria italica
Seita.1G136200 2.0kb downstream 2.0kb downstream 11600 true scaffold_1: 13623885-13635484 Setaria italica
Seita.1G136200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 13623885-13625884 Setaria italica
Seita.1G136200 5.0kb upstream 5.0kb upstream 14600 true scaffold_1: 13625885-13640484 Setaria italica
Seita.1G136200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 13635485-13640484 Setaria italica
Seita.1G136200 5.0kb downstream 5.0kb downstream 14600 true scaffold_1: 13620885-13635484 Setaria italica
Seita.1G136200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 13620885-13625884 Setaria italica
Seita.1G136200 10.0kb upstream 10.0kb upstream 19600 true scaffold_1: 13625885-13645484 Setaria italica
Seita.1G136200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 13635485-13645484 Setaria italica
Seita.1G136200 10.0kb downstream 10.0kb downstream 19600 true scaffold_1: 13615885-13635484 Setaria italica
Seita.1G136200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 13615885-13625884 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175072 5267 Panicoideae View MSA
124572925 5269 Grass View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.405       High
cufflinks 3.313        
cufflinks 1.343        
cufflinks 0.55       Low
cufflinks 0.759       Low
cufflinks 3.421        
cufflinks 2.022        
cufflinks 1.826        
cufflinks 3.109        
cufflinks 2.442        
cufflinks 3.355        
cufflinks 2.952        
cufflinks 2.234        
cufflinks 2.373        
cufflinks 3.188        
cufflinks 2.595        
cufflinks 3.384        
cufflinks 2.909        
cufflinks 0.567       Low
cufflinks 3.053        

0 Strain