Gene : Seita.1G138500 S. italica v2.2
Defline:  (1 of 2) PTHR10231:SF48 - CMP-SIALIC ACID TRANSPORTER 1 Genomic Order:  1385
Name:  ? Seita.1G138500 Secondary Identifier:  ? PAC:32698315
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G138500 0.5kb upstream 0.5kb upstream 4820 true scaffold_1: 14261687-14266506 Setaria italica
Seita.1G138500 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 14261687-14262186 Setaria italica
Seita.1G138500 0.5kb downstream 0.5kb downstream 4820 true scaffold_1: 14262187-14267006 Setaria italica
Seita.1G138500 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 14266507-14267006 Setaria italica
Seita.1G138500 1.0kb upstream 1.0kb upstream 5320 true scaffold_1: 14261187-14266506 Setaria italica
Seita.1G138500 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 14261187-14262186 Setaria italica
Seita.1G138500 1.0kb downstream 1.0kb downstream 5320 true scaffold_1: 14262187-14267506 Setaria italica
Seita.1G138500 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 14266507-14267506 Setaria italica
Seita.1G138500 2.0kb upstream 2.0kb upstream 6320 true scaffold_1: 14260187-14266506 Setaria italica
Seita.1G138500 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 14260187-14262186 Setaria italica
Seita.1G138500 2.0kb downstream 2.0kb downstream 6320 true scaffold_1: 14262187-14268506 Setaria italica
Seita.1G138500 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 14266507-14268506 Setaria italica
Seita.1G138500 5.0kb upstream 5.0kb upstream 9320 true scaffold_1: 14257187-14266506 Setaria italica
Seita.1G138500 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 14257187-14262186 Setaria italica
Seita.1G138500 5.0kb downstream 5.0kb downstream 9320 true scaffold_1: 14262187-14271506 Setaria italica
Seita.1G138500 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 14266507-14271506 Setaria italica
Seita.1G138500 10.0kb upstream 10.0kb upstream 14320 true scaffold_1: 14252187-14266506 Setaria italica
Seita.1G138500 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 14252187-14262186 Setaria italica
Seita.1G138500 10.0kb downstream 10.0kb downstream 14320 true scaffold_1: 14262187-14276506 Setaria italica
Seita.1G138500 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 14266507-14276506 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121793289 5273 Angiosperm Singleton cluster - no MSA
122052612 5267 Panicoideae Singleton cluster - no MSA
124352536 5269 Grass Singleton cluster - no MSA
123429066 5275 Viridiplantae View MSA
121064472 5274 Embryophyte Singleton cluster - no MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.125        
cufflinks 1.728       High
cufflinks 0.792        
cufflinks 0.647        
cufflinks 0.425       Low
cufflinks 1.615       High
cufflinks 0.948        
cufflinks 1.031        
cufflinks 0.652        
cufflinks 0.913        
cufflinks 0.813        
cufflinks 1.031        
cufflinks 1.146        
cufflinks 0.68        
cufflinks 0.828        
cufflinks 0.997        
cufflinks 1.307       High
cufflinks 0.613       Low
cufflinks 0.693        
cufflinks 1.233        

0 Strain