Gene : Seita.1G137200 S. italica v2.2
Defline:  (1 of 1) PF05859 - Mis12 protein (Mis12) Genomic Order:  1372
Name:  ? Seita.1G137200 Secondary Identifier:  ? PAC:32695220
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G137200 0.5kb upstream 0.5kb upstream 4232 true scaffold_1: 13932826-13937057 Setaria italica
Seita.1G137200 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 13932826-13933325 Setaria italica
Seita.1G137200 0.5kb downstream 0.5kb downstream 4232 true scaffold_1: 13933326-13937557 Setaria italica
Seita.1G137200 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 13937058-13937557 Setaria italica
Seita.1G137200 1.0kb upstream 1.0kb upstream 4732 true scaffold_1: 13932326-13937057 Setaria italica
Seita.1G137200 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 13932326-13933325 Setaria italica
Seita.1G137200 1.0kb downstream 1.0kb downstream 4732 true scaffold_1: 13933326-13938057 Setaria italica
Seita.1G137200 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 13937058-13938057 Setaria italica
Seita.1G137200 2.0kb upstream 2.0kb upstream 5732 true scaffold_1: 13931326-13937057 Setaria italica
Seita.1G137200 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 13931326-13933325 Setaria italica
Seita.1G137200 2.0kb downstream 2.0kb downstream 5732 true scaffold_1: 13933326-13939057 Setaria italica
Seita.1G137200 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 13937058-13939057 Setaria italica
Seita.1G137200 5.0kb upstream 5.0kb upstream 8732 true scaffold_1: 13928326-13937057 Setaria italica
Seita.1G137200 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 13928326-13933325 Setaria italica
Seita.1G137200 5.0kb downstream 5.0kb downstream 8732 true scaffold_1: 13933326-13942057 Setaria italica
Seita.1G137200 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 13937058-13942057 Setaria italica
Seita.1G137200 10.0kb upstream 10.0kb upstream 13732 true scaffold_1: 13923326-13937057 Setaria italica
Seita.1G137200 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 13923326-13933325 Setaria italica
Seita.1G137200 10.0kb downstream 10.0kb downstream 13732 true scaffold_1: 13933326-13947057 Setaria italica
Seita.1G137200 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 13937058-13947057 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180940 5267 Panicoideae View MSA
124573203 5269 Grass View MSA
122047255 5273 Angiosperm View MSA
121346479 5274 Embryophyte View MSA
123380391 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.803        
cufflinks 5.956        
cufflinks 5.397        
cufflinks 4.612        
cufflinks 4.093       Low
cufflinks 6.025        
cufflinks 4.842        
cufflinks 6.817        
cufflinks 4.311       Low
cufflinks 4.276       Low
cufflinks 4.533        
cufflinks 8.458       High
cufflinks 6.633        
cufflinks 4.961        
cufflinks 6.492        
cufflinks 4.46        
cufflinks 8.532       High
cufflinks 6.714        
cufflinks 4.318       Low
cufflinks 7.48       High

0 Strain