Gene : Seita.1G142900 S. italica v2.2
Defline:  (1 of 1) PF14661 - HAUS augmin-like complex subunit 6 N-terminus (HAUS6_N) Genomic Order:  1429
Name:  ? Seita.1G142900 Secondary Identifier:  ? PAC:32694980
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G142900 0.5kb upstream 0.5kb upstream 9719 true scaffold_1: 15193805-15203523 Setaria italica
Seita.1G142900 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15203024-15203523 Setaria italica
Seita.1G142900 0.5kb downstream 0.5kb downstream 9719 true scaffold_1: 15193305-15203023 Setaria italica
Seita.1G142900 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15193305-15193804 Setaria italica
Seita.1G142900 1.0kb upstream 1.0kb upstream 10219 true scaffold_1: 15193805-15204023 Setaria italica
Seita.1G142900 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15203024-15204023 Setaria italica
Seita.1G142900 1.0kb downstream 1.0kb downstream 10219 true scaffold_1: 15192805-15203023 Setaria italica
Seita.1G142900 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15192805-15193804 Setaria italica
Seita.1G142900 2.0kb upstream 2.0kb upstream 11219 true scaffold_1: 15193805-15205023 Setaria italica
Seita.1G142900 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15203024-15205023 Setaria italica
Seita.1G142900 2.0kb downstream 2.0kb downstream 11219 true scaffold_1: 15191805-15203023 Setaria italica
Seita.1G142900 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15191805-15193804 Setaria italica
Seita.1G142900 5.0kb upstream 5.0kb upstream 14219 true scaffold_1: 15193805-15208023 Setaria italica
Seita.1G142900 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15203024-15208023 Setaria italica
Seita.1G142900 5.0kb downstream 5.0kb downstream 14219 true scaffold_1: 15188805-15203023 Setaria italica
Seita.1G142900 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15188805-15193804 Setaria italica
Seita.1G142900 10.0kb upstream 10.0kb upstream 19219 true scaffold_1: 15193805-15213023 Setaria italica
Seita.1G142900 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15203024-15213023 Setaria italica
Seita.1G142900 10.0kb downstream 10.0kb downstream 19219 true scaffold_1: 15183805-15203023 Setaria italica
Seita.1G142900 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15183805-15193804 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195821 5267 Panicoideae View MSA
124568297 5269 Grass View MSA
122045582 5273 Angiosperm View MSA
121351307 5274 Embryophyte View MSA
123382113 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.908       High
cufflinks 11.225       High
cufflinks 2.741       Low
cufflinks 2.543       Low
cufflinks 2.759       Low
cufflinks 10.616       High
cufflinks 6.678        
cufflinks 6.832        
cufflinks 5.812        
cufflinks 6.098        
cufflinks 9.506        
cufflinks 6.251        
cufflinks 7.636        
cufflinks 2.122       Low
cufflinks 9.164        
cufflinks 5.044        
cufflinks 7.236        
cufflinks 4.595        
cufflinks 2.389       Low
cufflinks 8.449        

0 Strain