Gene : Seita.1G147700 S. italica v2.2
Defline:  (1 of 1) PTHR19305//PTHR19305:SF11 - SYNAPTOSOMAL ASSOCIATED PROTEIN Genomic Order:  1477
Name:  ? Seita.1G147700 Secondary Identifier:  ? PAC:32697307
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G147700 0.5kb upstream 0.5kb upstream 3465 true scaffold_1: 17590504-17593968 Setaria italica
Seita.1G147700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17590504-17591003 Setaria italica
Seita.1G147700 0.5kb downstream 0.5kb downstream 3465 true scaffold_1: 17591004-17594468 Setaria italica
Seita.1G147700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17593969-17594468 Setaria italica
Seita.1G147700 1.0kb upstream 1.0kb upstream 3965 true scaffold_1: 17590004-17593968 Setaria italica
Seita.1G147700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17590004-17591003 Setaria italica
Seita.1G147700 1.0kb downstream 1.0kb downstream 3965 true scaffold_1: 17591004-17594968 Setaria italica
Seita.1G147700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17593969-17594968 Setaria italica
Seita.1G147700 2.0kb upstream 2.0kb upstream 4965 true scaffold_1: 17589004-17593968 Setaria italica
Seita.1G147700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17589004-17591003 Setaria italica
Seita.1G147700 2.0kb downstream 2.0kb downstream 4965 true scaffold_1: 17591004-17595968 Setaria italica
Seita.1G147700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17593969-17595968 Setaria italica
Seita.1G147700 5.0kb upstream 5.0kb upstream 7965 true scaffold_1: 17586004-17593968 Setaria italica
Seita.1G147700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17586004-17591003 Setaria italica
Seita.1G147700 5.0kb downstream 5.0kb downstream 7965 true scaffold_1: 17591004-17598968 Setaria italica
Seita.1G147700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17593969-17598968 Setaria italica
Seita.1G147700 10.0kb upstream 10.0kb upstream 12965 true scaffold_1: 17581004-17593968 Setaria italica
Seita.1G147700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17581004-17591003 Setaria italica
Seita.1G147700 10.0kb downstream 10.0kb downstream 12965 true scaffold_1: 17591004-17603968 Setaria italica
Seita.1G147700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17593969-17603968 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183276 5267 Panicoideae View MSA
124579554 5269 Grass View MSA
122050570 5273 Angiosperm View MSA
121349451 5274 Embryophyte View MSA
123428314 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.988     High  
cufflinks 5.407       Low
cufflinks 13.658     High  
cufflinks 16.375     High  
cufflinks 16.135     High  
cufflinks 6.279       Low
cufflinks 7.908       Low
cufflinks 9.642        
cufflinks 9.39        
cufflinks 21.793     High  
cufflinks 10.381        
cufflinks 46.183     High High
cufflinks 18.374     High  
cufflinks 50.36     High High
cufflinks 36.359     High High
cufflinks 6.379       Low
cufflinks 29.736     High  
cufflinks 12.617     High  
cufflinks 26.948     High  
cufflinks 28.363     High  

0 Strain