Gene : Seita.1G148400 S. italica v2.2
Defline:  (1 of 2) PTHR23405:SF4 - PROTEIN MAK16 HOMOLOG Genomic Order:  1484
Name:  ? Seita.1G148400 Secondary Identifier:  ? PAC:32696552
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G148400 0.5kb upstream 0.5kb upstream 4863 true scaffold_1: 18118264-18123126 Setaria italica
Seita.1G148400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 18118264-18118763 Setaria italica
Seita.1G148400 0.5kb downstream 0.5kb downstream 4863 true scaffold_1: 18118764-18123626 Setaria italica
Seita.1G148400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 18123127-18123626 Setaria italica
Seita.1G148400 1.0kb upstream 1.0kb upstream 5363 true scaffold_1: 18117764-18123126 Setaria italica
Seita.1G148400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 18117764-18118763 Setaria italica
Seita.1G148400 1.0kb downstream 1.0kb downstream 5363 true scaffold_1: 18118764-18124126 Setaria italica
Seita.1G148400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 18123127-18124126 Setaria italica
Seita.1G148400 2.0kb upstream 2.0kb upstream 6363 true scaffold_1: 18116764-18123126 Setaria italica
Seita.1G148400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 18116764-18118763 Setaria italica
Seita.1G148400 2.0kb downstream 2.0kb downstream 6363 true scaffold_1: 18118764-18125126 Setaria italica
Seita.1G148400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 18123127-18125126 Setaria italica
Seita.1G148400 5.0kb upstream 5.0kb upstream 9363 true scaffold_1: 18113764-18123126 Setaria italica
Seita.1G148400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 18113764-18118763 Setaria italica
Seita.1G148400 5.0kb downstream 5.0kb downstream 9363 true scaffold_1: 18118764-18128126 Setaria italica
Seita.1G148400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 18123127-18128126 Setaria italica
Seita.1G148400 10.0kb upstream 10.0kb upstream 14363 true scaffold_1: 18108764-18123126 Setaria italica
Seita.1G148400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 18108764-18118763 Setaria italica
Seita.1G148400 10.0kb downstream 10.0kb downstream 14363 true scaffold_1: 18118764-18133126 Setaria italica
Seita.1G148400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 18123127-18133126 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175081 5267 Panicoideae View MSA
124574903 5269 Grass View MSA
122042621 5273 Angiosperm View MSA
121345777 5274 Embryophyte View MSA
123426368 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.976     High  
cufflinks 23.373     High High
cufflinks 11.04     High  
cufflinks 8.106       Low
cufflinks 10.82     High  
cufflinks 23.917     High High
cufflinks 14.321     High  
cufflinks 23.104     High  
cufflinks 23.699     High High
cufflinks 10.509        
cufflinks 15.158     High  
cufflinks 23.042     High  
cufflinks 11.662        
cufflinks 20.607     High  
cufflinks 20.693     High  
cufflinks 9.48       Low
cufflinks 25.935     High High
cufflinks 9.67       Low
cufflinks 10.259       Low
cufflinks 23.71     High High

0 Strain