Gene : Seita.1G146400 S. italica v2.2
Defline:  (1 of 1) PTHR33270:SF5 - GB Genomic Order:  1464
Name:  ? Seita.1G146400 Secondary Identifier:  ? PAC:32696200
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G146400 0.5kb upstream 0.5kb upstream 1855 true scaffold_1: 16769634-16771488 Setaria italica
Seita.1G146400 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 16769634-16770133 Setaria italica
Seita.1G146400 0.5kb downstream 0.5kb downstream 1855 true scaffold_1: 16770134-16771988 Setaria italica
Seita.1G146400 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 16771489-16771988 Setaria italica
Seita.1G146400 1.0kb upstream 1.0kb upstream 2355 true scaffold_1: 16769134-16771488 Setaria italica
Seita.1G146400 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 16769134-16770133 Setaria italica
Seita.1G146400 1.0kb downstream 1.0kb downstream 2355 true scaffold_1: 16770134-16772488 Setaria italica
Seita.1G146400 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 16771489-16772488 Setaria italica
Seita.1G146400 2.0kb upstream 2.0kb upstream 3355 true scaffold_1: 16768134-16771488 Setaria italica
Seita.1G146400 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 16768134-16770133 Setaria italica
Seita.1G146400 2.0kb downstream 2.0kb downstream 3355 true scaffold_1: 16770134-16773488 Setaria italica
Seita.1G146400 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 16771489-16773488 Setaria italica
Seita.1G146400 5.0kb upstream 5.0kb upstream 6355 true scaffold_1: 16765134-16771488 Setaria italica
Seita.1G146400 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 16765134-16770133 Setaria italica
Seita.1G146400 5.0kb downstream 5.0kb downstream 6355 true scaffold_1: 16770134-16776488 Setaria italica
Seita.1G146400 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 16771489-16776488 Setaria italica
Seita.1G146400 10.0kb upstream 10.0kb upstream 11355 true scaffold_1: 16760134-16771488 Setaria italica
Seita.1G146400 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 16760134-16770133 Setaria italica
Seita.1G146400 10.0kb downstream 10.0kb downstream 11355 true scaffold_1: 16770134-16781488 Setaria italica
Seita.1G146400 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 16771489-16781488 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181473 5267 Panicoideae View MSA
124586076 5269 Grass View MSA
122049795 5273 Angiosperm View MSA
121311591 5274 Embryophyte View MSA
123348867 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.854     High  
cufflinks 16.073     High  
cufflinks 5.114       Low
cufflinks 8.237        
cufflinks 10.502        
cufflinks 22.555     High  
cufflinks 17.732     High  
cufflinks 14.583     High  
cufflinks 8.869        
cufflinks 67.968     High High
cufflinks 16.926     High  
cufflinks 11.359        
cufflinks 13.324        
cufflinks 11.241        
cufflinks 11.056        
cufflinks 17.373     High  
cufflinks 18.547     High  
cufflinks 18.03     High  
cufflinks 6.966       Low
cufflinks 9.499        

0 Strain