Gene : Seita.1G146800 S. italica v2.2
Defline:  (1 of 1) PTHR32091:SF5 - GLYCINE-RICH PROTEIN Genomic Order:  1468
Name:  ? Seita.1G146800 Secondary Identifier:  ? PAC:32697815
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G146800 0.5kb upstream 0.5kb upstream 4395 true scaffold_1: 17090833-17095227 Setaria italica
Seita.1G146800 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 17090833-17091332 Setaria italica
Seita.1G146800 0.5kb downstream 0.5kb downstream 4395 true scaffold_1: 17091333-17095727 Setaria italica
Seita.1G146800 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 17095228-17095727 Setaria italica
Seita.1G146800 1.0kb upstream 1.0kb upstream 4895 true scaffold_1: 17090333-17095227 Setaria italica
Seita.1G146800 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 17090333-17091332 Setaria italica
Seita.1G146800 1.0kb downstream 1.0kb downstream 4895 true scaffold_1: 17091333-17096227 Setaria italica
Seita.1G146800 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 17095228-17096227 Setaria italica
Seita.1G146800 2.0kb upstream 2.0kb upstream 5895 true scaffold_1: 17089333-17095227 Setaria italica
Seita.1G146800 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 17089333-17091332 Setaria italica
Seita.1G146800 2.0kb downstream 2.0kb downstream 5895 true scaffold_1: 17091333-17097227 Setaria italica
Seita.1G146800 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 17095228-17097227 Setaria italica
Seita.1G146800 5.0kb upstream 5.0kb upstream 8895 true scaffold_1: 17086333-17095227 Setaria italica
Seita.1G146800 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 17086333-17091332 Setaria italica
Seita.1G146800 5.0kb downstream 5.0kb downstream 8895 true scaffold_1: 17091333-17100227 Setaria italica
Seita.1G146800 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 17095228-17100227 Setaria italica
Seita.1G146800 10.0kb upstream 10.0kb upstream 13895 true scaffold_1: 17081333-17095227 Setaria italica
Seita.1G146800 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 17081333-17091332 Setaria italica
Seita.1G146800 10.0kb downstream 10.0kb downstream 13895 true scaffold_1: 17091333-17105227 Setaria italica
Seita.1G146800 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 17095228-17105227 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185870 5267 Panicoideae View MSA
124588244 5269 Grass View MSA
122051385 5273 Angiosperm View MSA
121351135 5274 Embryophyte View MSA
123426003 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.043        
cufflinks 13.829     High High
cufflinks 5.103       Low
cufflinks 4.192       Low
cufflinks 6.723        
cufflinks 13.947     High High
cufflinks 11.13        
cufflinks 9.935        
cufflinks 12.368        
cufflinks 8.682        
cufflinks 12.851        
cufflinks 10.518        
cufflinks 5.893       Low
cufflinks 7.473        
cufflinks 14.001       High
cufflinks 7.947        
cufflinks 13.256        
cufflinks 8.845        
cufflinks 6.602        
cufflinks 13.035        

0 Strain