Gene : Seita.1G156000 S. italica v2.2
Defline:  (1 of 1) 1.3.1.21 - 7-dehydrocholesterol reductase / Sterol Delta(7)-reductase Genomic Order:  1560
Name:  ? Seita.1G156000 Secondary Identifier:  ? PAC:32696801
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-2541 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G156000 0.5kb upstream 0.5kb upstream 7048 true scaffold_1: 21584493-21591540 Setaria italica
Seita.1G156000 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 21584493-21584992 Setaria italica
Seita.1G156000 0.5kb downstream 0.5kb downstream 7048 true scaffold_1: 21584993-21592040 Setaria italica
Seita.1G156000 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 21591541-21592040 Setaria italica
Seita.1G156000 1.0kb upstream 1.0kb upstream 7548 true scaffold_1: 21583993-21591540 Setaria italica
Seita.1G156000 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 21583993-21584992 Setaria italica
Seita.1G156000 1.0kb downstream 1.0kb downstream 7548 true scaffold_1: 21584993-21592540 Setaria italica
Seita.1G156000 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 21591541-21592540 Setaria italica
Seita.1G156000 2.0kb upstream 2.0kb upstream 8548 true scaffold_1: 21582993-21591540 Setaria italica
Seita.1G156000 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 21582993-21584992 Setaria italica
Seita.1G156000 2.0kb downstream 2.0kb downstream 8548 true scaffold_1: 21584993-21593540 Setaria italica
Seita.1G156000 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 21591541-21593540 Setaria italica
Seita.1G156000 5.0kb upstream 5.0kb upstream 11548 true scaffold_1: 21579993-21591540 Setaria italica
Seita.1G156000 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 21579993-21584992 Setaria italica
Seita.1G156000 5.0kb downstream 5.0kb downstream 11548 true scaffold_1: 21584993-21596540 Setaria italica
Seita.1G156000 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 21591541-21596540 Setaria italica
Seita.1G156000 10.0kb upstream 10.0kb upstream 16548 true scaffold_1: 21574993-21591540 Setaria italica
Seita.1G156000 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 21574993-21584992 Setaria italica
Seita.1G156000 10.0kb downstream 10.0kb downstream 16548 true scaffold_1: 21584993-21601540 Setaria italica
Seita.1G156000 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 21591541-21601540 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185822 5267 Panicoideae View MSA
124574487 5269 Grass View MSA
122045488 5273 Angiosperm View MSA
121344145 5274 Embryophyte View MSA
123426486 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.108     High  
cufflinks 30.071     High  
cufflinks 16.214     High  
cufflinks 14.619     High  
cufflinks 13.641     High Low
cufflinks 33.252     High High
cufflinks 18.049     High  
cufflinks 24.962     High  
cufflinks 16.552     High  
cufflinks 28.51     High  
cufflinks 27.345     High  
cufflinks 24.595     High  
cufflinks 25.229     High  
cufflinks 19.706     High  
cufflinks 32.989     High High
cufflinks 12.068     High Low
cufflinks 35.258     High High
cufflinks 10.074       Low
cufflinks 11.831     High Low
cufflinks 34.086     High High

0 Strain