Gene : Seita.1G086700 S. italica v2.2
Defline:  (1 of 7) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  867
Name:  ? Seita.1G086700 Secondary Identifier:  ? PAC:32697353
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CALVIN-PWY Setaria italica pathologic  
Sitalica PHOTOALL-PWY Setaria italica pathologic  
Sitalica PWY-5723 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G086700 0.5kb upstream 0.5kb upstream 1260 true scaffold_1: 7730181-7731440 Setaria italica
Seita.1G086700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7730941-7731440 Setaria italica
Seita.1G086700 0.5kb downstream 0.5kb downstream 1260 true scaffold_1: 7729681-7730940 Setaria italica
Seita.1G086700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7729681-7730180 Setaria italica
Seita.1G086700 1.0kb upstream 1.0kb upstream 1760 true scaffold_1: 7730181-7731940 Setaria italica
Seita.1G086700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7730941-7731940 Setaria italica
Seita.1G086700 1.0kb downstream 1.0kb downstream 1760 true scaffold_1: 7729181-7730940 Setaria italica
Seita.1G086700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7729181-7730180 Setaria italica
Seita.1G086700 2.0kb upstream 2.0kb upstream 2760 true scaffold_1: 7730181-7732940 Setaria italica
Seita.1G086700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7730941-7732940 Setaria italica
Seita.1G086700 2.0kb downstream 2.0kb downstream 2760 true scaffold_1: 7728181-7730940 Setaria italica
Seita.1G086700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7728181-7730180 Setaria italica
Seita.1G086700 5.0kb upstream 5.0kb upstream 5760 true scaffold_1: 7730181-7735940 Setaria italica
Seita.1G086700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7730941-7735940 Setaria italica
Seita.1G086700 5.0kb downstream 5.0kb downstream 5760 true scaffold_1: 7725181-7730940 Setaria italica
Seita.1G086700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7725181-7730180 Setaria italica
Seita.1G086700 10.0kb upstream 10.0kb upstream 10760 true scaffold_1: 7730181-7740940 Setaria italica
Seita.1G086700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7730941-7740940 Setaria italica
Seita.1G086700 10.0kb downstream 10.0kb downstream 10760 true scaffold_1: 7720181-7730940 Setaria italica
Seita.1G086700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7720181-7730180 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184926 5267 Panicoideae View MSA
124587434 5269 Grass View MSA
122048264 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.22     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.066     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain